Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99946 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00038 * 3 2 1 7 7 C 1.38635 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00132 * 179.72922 * 7 2 1 9 9 O 1.34929 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.42903 * 116.99828 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47306 * 270.00052 * 10 9 7 12 12 C 1.52995 * 109.47305 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47013 * 60.00305 * 12 11 10 14 14 F 1.39894 * 109.47003 * 59.99944 * 13 12 11 15 15 C 1.53003 * 109.46897 * 299.99864 * 13 12 11 16 16 C 1.53001 * 109.46497 * 150.00446 * 10 9 7 17 17 H 0.97000 * 119.99571 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47196 * 30.00910 * 10 9 7 19 19 H 1.09000 * 109.47693 * 300.00553 * 11 10 9 20 20 H 1.09003 * 109.46729 * 60.00290 * 11 10 9 21 21 H 1.09003 * 109.47531 * 300.00769 * 12 11 10 22 22 H 1.08999 * 109.47627 * 180.02562 * 12 11 10 23 23 H 1.08999 * 109.47375 * 180.02562 * 13 12 11 24 24 H 1.08995 * 109.47324 * 300.00091 * 15 13 12 25 25 H 1.08999 * 109.47049 * 179.97438 * 15 13 12 26 26 H 1.09005 * 109.47230 * 299.99441 * 16 10 9 27 27 H 1.08995 * 109.47368 * 60.00036 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8912 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2007 -0.0050 9 8 1.3343 -2.3691 -0.0005 10 6 2.1127 -3.5676 -0.0017 11 6 2.3893 -3.9947 -1.4445 12 6 3.2221 -5.2781 -1.4457 13 6 2.4521 -6.3864 -0.7246 14 9 1.2397 -6.6165 -1.3835 15 6 2.1754 -5.9593 0.7183 16 6 1.3431 -4.6760 0.7196 17 1 -0.4849 0.8401 0.0004 18 1 3.0573 -3.3879 0.5116 19 1 1.4447 -4.1744 -1.9578 20 1 2.9375 -3.2050 -1.9583 21 1 4.1668 -5.0989 -0.9323 22 1 3.4196 -5.5822 -2.4736 23 1 3.0456 -7.3006 -0.7250 24 1 3.1201 -5.7799 1.2317 25 1 1.6265 -6.7486 1.2319 26 1 1.1460 -4.3718 1.7476 27 1 0.3985 -4.8557 0.2064 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -107.592611 kcal Electronic energy + Delta-G solvation = -11946.684868 eV Core-core repulsion = 9618.572507 eV Total energy + Delta-G solvation = -2328.112361 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.34962 -37.75832 -34.96116 -31.61103 -30.49362 -28.61246 -24.45496 -22.30246 -21.59307 -19.23196 -17.47120 -16.25404 -15.44234 -15.05225 -15.00910 -14.05203 -13.44047 -13.22611 -12.77413 -12.19355 -11.98054 -11.70382 -11.56024 -11.11817 -11.04232 -10.75056 -10.36187 -10.26158 -10.18757 -9.65842 -9.29878 -8.99181 -7.92812 -5.91081 -3.54232 3.32325 3.35322 3.39851 4.32145 4.81920 4.84137 4.93664 5.02266 5.39181 5.53105 5.62340 5.76272 5.79552 5.86288 5.95547 6.23436 6.27651 6.28858 6.62639 6.67104 6.84022 7.00417 7.08120 7.50704 8.47031 9.52390 10.22957 11.30182 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.075649 B = 0.009720 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.043922 B = 2880.098378 C = 2968.889062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.021 3.979 3 Si 0.923 3.077 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.357 4.357 8 H 0.062 0.938 9 O -0.286 6.286 10 C 0.100 3.900 11 C -0.140 4.140 12 C -0.142 4.142 13 C 0.092 3.908 14 F -0.213 7.213 15 C -0.140 4.140 16 C -0.116 4.116 17 H 0.257 0.743 18 H 0.037 0.963 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 -10.336 -0.300 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.750 3.250 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.437 4.437 8 H 0.080 0.920 9 O -0.201 6.201 10 C 0.040 3.960 11 C -0.178 4.178 12 C -0.180 4.180 13 C 0.056 3.944 14 F -0.194 7.194 15 C -0.178 4.178 16 C -0.154 4.154 17 H 0.067 0.933 18 H 0.055 0.945 19 H 0.087 0.913 20 H 0.085 0.915 21 H 0.093 0.907 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.233 -10.230 -0.314 11.983 hybrid contribution 0.674 0.818 -0.094 1.064 sum 6.907 -9.411 -0.408 11.681 Atomic orbital electron populations 1.70036 1.05384 1.25689 1.52146 1.24950 0.95639 0.97693 0.99430 0.85926 0.78788 0.82553 0.77704 1.19985 1.20923 1.20924 1.20921 0.90070 0.82850 1.49834 0.92025 1.85692 1.31623 1.10217 1.92589 1.21702 0.93767 0.87723 0.92790 1.22067 1.00171 0.95388 1.00200 1.22115 0.99312 0.95974 1.00611 1.21560 0.81968 0.98535 0.92335 1.92786 1.47954 1.95870 1.82801 1.22086 1.01689 0.98863 0.95165 1.21505 0.99417 0.92985 1.01491 0.93324 0.94467 0.91339 0.91522 0.90671 0.91456 0.90719 0.90495 0.91106 0.91356 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.41 13.67 55.48 0.76 -27.65 15 2 C 0.02 0.62 5.49 -17.51 -0.10 0.52 15 3 Si 0.92 22.32 29.55 -169.99 -5.02 17.29 15 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.36 -10.60 9.77 30.88 0.30 -10.30 15 8 H 0.06 1.72 7.65 -52.48 -0.40 1.32 15 9 O -0.29 -8.33 9.43 -16.51 -0.16 -8.49 15 10 C 0.10 2.21 2.65 -26.73 -0.07 2.14 15 11 C -0.14 -2.76 5.42 -26.74 -0.14 -2.90 15 12 C -0.14 -2.10 5.72 -26.73 -0.15 -2.25 15 13 C 0.09 1.29 4.12 -26.73 -0.11 1.18 15 14 F -0.21 -3.60 16.04 2.25 0.04 -3.56 15 15 C -0.14 -2.00 5.72 -26.75 -0.15 -2.15 15 16 C -0.12 -2.21 5.45 -26.75 -0.15 -2.35 15 17 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 18 H 0.04 0.80 7.80 -51.93 -0.41 0.40 15 19 H 0.07 1.45 7.80 -51.93 -0.41 1.04 15 20 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.07 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.08 0.97 8.14 -51.93 -0.42 0.54 15 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.07 1.44 7.80 -51.93 -0.41 1.03 15 LS Contribution 230.72 15.07 3.48 3.48 Total: -1.00 -33.15 230.72 -5.19 -38.33 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -3.71 Total: -3.30 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.57 Total: -16.11 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.76 Total: -27.65 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.16 Total: -8.49 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -33.15 -5.19 -38.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.258 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds