Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99946 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00038 * 3 2 1 7 7 C 1.38635 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00132 * 179.72922 * 7 2 1 9 9 O 1.34929 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.42903 * 116.99828 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47306 * 270.00052 * 10 9 7 12 12 C 1.52995 * 109.47305 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47013 * 60.00305 * 12 11 10 14 14 F 1.39894 * 109.47003 * 59.99944 * 13 12 11 15 15 C 1.53003 * 109.46897 * 299.99864 * 13 12 11 16 16 C 1.53001 * 109.46497 * 150.00446 * 10 9 7 17 17 H 0.97000 * 119.99571 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47196 * 30.00910 * 10 9 7 19 19 H 1.09000 * 109.47693 * 300.00553 * 11 10 9 20 20 H 1.09003 * 109.46729 * 60.00290 * 11 10 9 21 21 H 1.09003 * 109.47531 * 300.00769 * 12 11 10 22 22 H 1.08999 * 109.47627 * 180.02562 * 12 11 10 23 23 H 1.08999 * 109.47375 * 180.02562 * 13 12 11 24 24 H 1.08995 * 109.47324 * 300.00091 * 15 13 12 25 25 H 1.08999 * 109.47049 * 179.97438 * 15 13 12 26 26 H 1.09005 * 109.47230 * 299.99441 * 16 10 9 27 27 H 1.08995 * 109.47368 * 60.00036 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7098 1.3463 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8912 2.3964 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2007 -0.0050 9 8 1.3343 -2.3691 -0.0005 10 6 2.1127 -3.5676 -0.0017 11 6 2.3893 -3.9947 -1.4445 12 6 3.2221 -5.2781 -1.4457 13 6 2.4521 -6.3864 -0.7246 14 9 1.2397 -6.6165 -1.3835 15 6 2.1754 -5.9593 0.7183 16 6 1.3431 -4.6760 0.7196 17 1 -0.4849 0.8401 0.0004 18 1 3.0573 -3.3879 0.5116 19 1 1.4447 -4.1744 -1.9578 20 1 2.9375 -3.2050 -1.9583 21 1 4.1668 -5.0989 -0.9323 22 1 3.4196 -5.5822 -2.4736 23 1 3.0456 -7.3006 -0.7250 24 1 3.1201 -5.7799 1.2317 25 1 1.6265 -6.7486 1.2319 26 1 1.1460 -4.3718 1.7476 27 1 0.3985 -4.8557 0.2064 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -129.724704 kcal Electronic energy + Delta-G solvation = -11947.644587 eV Core-core repulsion = 9618.572507 eV Total energy + Delta-G solvation = -2329.072081 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.55264 -39.45963 -36.74773 -33.79497 -31.84867 -30.16303 -26.66858 -23.68548 -23.08197 -20.68707 -19.60115 -17.72828 -17.13221 -16.49529 -16.23866 -15.92672 -15.16300 -14.93844 -14.27330 -13.66405 -13.58026 -13.40243 -13.12469 -12.84804 -12.71874 -12.24256 -12.06905 -11.89319 -11.70974 -11.19585 -11.09750 -10.84494 -10.09610 -8.16892 -5.85774 1.38612 1.44775 1.55343 2.32916 3.15849 3.48685 3.64067 3.71485 3.95566 4.15455 4.24577 4.34920 4.40417 4.45758 4.52310 4.80414 4.98045 5.02208 5.15553 5.16521 5.18769 5.29482 5.44535 5.48298 6.22402 7.26334 8.10689 9.08959 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.075649 B = 0.009720 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.043922 B = 2880.098378 C = 2968.889062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.049 4.049 3 Si 1.006 2.994 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.369 4.369 8 H 0.073 0.927 9 O -0.335 6.335 10 C 0.086 3.914 11 C -0.135 4.135 12 C -0.135 4.135 13 C 0.086 3.914 14 F -0.233 7.233 15 C -0.132 4.132 16 C -0.114 4.114 17 H 0.259 0.741 18 H 0.045 0.955 19 H 0.041 0.959 20 H 0.050 0.950 21 H 0.100 0.900 22 H 0.085 0.915 23 H 0.124 0.876 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.919 -11.219 -0.083 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.241 4.241 3 Si 0.828 3.172 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.448 4.448 8 H 0.091 0.909 9 O -0.251 6.251 10 C 0.028 3.972 11 C -0.174 4.174 12 C -0.172 4.172 13 C 0.050 3.950 14 F -0.215 7.215 15 C -0.169 4.169 16 C -0.152 4.152 17 H 0.068 0.932 18 H 0.063 0.937 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.119 0.881 22 H 0.104 0.896 23 H 0.142 0.858 24 H 0.121 0.879 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.580 -11.149 -0.098 14.068 hybrid contribution -0.059 1.012 -0.157 1.026 sum 8.521 -10.137 -0.255 13.245 Atomic orbital electron populations 1.70221 1.07720 1.27037 1.54016 1.26266 0.96742 1.02163 0.98903 0.84689 0.78116 0.76514 0.77890 1.17846 1.20318 1.20141 1.21427 0.90720 0.83589 1.49050 0.90901 1.85622 1.34461 1.11996 1.93031 1.22121 0.93916 0.86278 0.94884 1.21940 0.99718 0.97907 0.97794 1.22114 0.99315 0.93245 1.02551 1.21888 0.81495 1.00219 0.91365 1.92756 1.49491 1.95999 1.83218 1.22101 1.02202 0.96348 0.96287 1.21493 0.99057 0.94639 0.99994 0.93194 0.93728 0.94054 0.93100 0.88112 0.89605 0.85801 0.87888 0.88888 0.92267 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.22 13.67 21.61 0.30 -61.92 15 2 C -0.05 -2.94 5.49 84.83 0.47 -2.47 15 3 Si 1.01 46.02 29.55 68.60 2.03 48.04 15 4 H -0.25 -10.68 7.11 99.48 0.71 -9.98 15 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 7 C -0.37 -22.30 9.77 67.91 0.66 -21.63 15 8 H 0.07 4.07 7.65 -2.91 -0.02 4.05 15 9 O -0.34 -20.23 9.43 -81.98 -0.77 -21.01 15 10 C 0.09 3.86 2.65 30.59 0.08 3.94 15 11 C -0.14 -5.34 5.42 30.59 0.17 -5.18 15 12 C -0.13 -3.57 5.72 30.59 0.17 -3.40 15 13 C 0.09 2.10 4.12 30.60 0.13 2.23 15 14 F -0.23 -7.48 16.04 44.97 0.72 -6.76 15 15 C -0.13 -3.35 5.72 30.58 0.17 -3.17 15 16 C -0.11 -4.34 5.45 30.58 0.17 -4.17 15 17 H 0.26 15.84 8.31 -92.71 -0.77 15.07 15 18 H 0.04 1.90 7.80 -2.39 -0.02 1.88 15 19 H 0.04 1.81 7.80 -2.39 -0.02 1.79 15 20 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 21 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 23 H 0.12 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 26 H 0.06 2.29 8.14 -2.38 -0.02 2.27 15 27 H 0.04 1.91 7.80 -2.39 -0.02 1.89 15 Total: -1.00 -74.77 230.72 5.43 -69.35 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.14 Total: 6.15 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 2.02 Total: -33.85 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.30 Total: -61.92 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.77 Total: -21.01 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.72 Total: -6.76 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -74.77 5.43 -69.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.376 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds