Wall clock time and date at job start Mon Mar 30 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86794 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47314 * 269.99685 * 3 2 1 5 5 H 1.48503 * 109.47140 * 29.99780 * 3 2 1 6 6 H 1.48500 * 109.47295 * 149.99556 * 3 2 1 7 7 C 1.39941 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99082 * 163.15456 * 7 2 1 9 9 C 1.40582 * 120.00267 * 343.15230 * 7 2 1 10 10 C 1.46863 * 120.84966 * 336.27014 * 9 7 2 11 11 C 1.34075 * 119.69459 * 180.25437 * 10 9 7 12 12 N 1.37356 * 121.25572 * 359.44638 * 11 10 9 13 13 N 1.28973 * 131.74207 * 180.21531 * 12 11 10 14 14 N 1.28394 * 111.41139 * 180.31415 * 13 12 11 15 15 C 1.32887 * 109.87624 * 359.97438 * 14 13 12 16 16 C 1.37508 * 120.86262 * 0.56033 * 12 11 10 17 17 C 1.39500 * 121.10580 * 359.72938 * 16 12 11 18 18 H 0.97004 * 120.00459 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.15535 * 359.97438 * 10 9 7 20 20 H 1.07998 * 119.37231 * 179.72126 * 11 10 9 21 21 H 1.08001 * 127.13701 * 180.02562 * 15 14 13 22 22 H 1.07999 * 120.61454 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0463 -1.4001 5 1 1.4399 2.6526 0.7000 6 1 3.5400 1.4401 0.7001 7 6 2.0081 -1.2120 0.0005 8 1 3.0533 -1.2321 -0.2705 9 6 1.3504 -2.4032 0.3539 10 6 0.1473 -2.3779 1.1958 11 6 -0.4587 -3.5283 1.5230 12 7 0.0174 -4.7368 1.0762 13 7 -0.3982 -5.9440 1.2587 14 7 0.3535 -6.7943 0.6584 15 6 1.3372 -6.1615 0.0276 16 6 1.1409 -4.8038 0.2862 17 6 1.8274 -3.6492 -0.0900 18 1 -0.4851 0.8400 -0.0004 19 1 -0.2450 -1.4374 1.5535 20 1 -1.3404 -3.5040 2.1461 21 1 2.1252 -6.6056 -0.5625 22 1 2.7092 -3.7111 -0.7104 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158702.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:16 Heat of formation + Delta-G solvation = 103.943592 kcal Electronic energy + Delta-G solvation = -10842.283514 eV Core-core repulsion = 8785.147021 eV Total energy + Delta-G solvation = -2057.136493 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.98920 -36.72631 -34.17403 -32.11245 -29.88186 -28.81980 -25.75428 -22.55562 -21.65757 -21.22427 -17.97992 -16.66386 -15.60561 -15.28080 -15.22920 -14.11506 -13.62520 -13.02918 -12.50224 -11.84106 -11.56500 -11.34136 -11.05478 -10.66386 -10.55564 -10.07974 -9.94110 -9.75397 -9.29694 -8.30657 -7.41007 -6.99640 -4.82124 2.03178 2.31875 2.81023 2.82267 2.89246 3.55600 3.66512 3.80346 4.01311 5.01634 5.39309 5.70721 6.09026 6.20295 6.43165 6.52467 6.64213 6.83245 7.11466 7.35377 7.39948 7.57132 7.87527 8.13689 8.26298 8.36472 9.59594 9.79204 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.090709 B = 0.010625 C = 0.009728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.606289 B = 2634.769347 C = 2877.615311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.072 3.928 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.420 4.420 8 H 0.094 0.906 9 C 0.120 3.880 10 C -0.101 4.101 11 C 0.039 3.961 12 N -0.257 5.257 13 N -0.197 5.197 14 N -0.251 5.251 15 C -0.151 4.151 16 C 0.093 3.907 17 C -0.291 4.291 18 H 0.293 0.707 19 H 0.157 0.843 20 H 0.148 0.852 21 H 0.174 0.826 22 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 4.695 0.652 5.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.150 4.150 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.449 4.449 8 H 0.112 0.888 9 C 0.113 3.887 10 C -0.124 4.124 11 C -0.082 4.082 12 N -0.036 5.036 13 N -0.171 5.171 14 N -0.109 5.109 15 C -0.317 4.317 16 C -0.028 4.028 17 C -0.316 4.316 18 H 0.104 0.896 19 H 0.174 0.826 20 H 0.166 0.834 21 H 0.191 0.809 22 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.550 3.719 1.379 4.004 hybrid contribution 1.027 1.558 -0.597 1.959 sum 1.577 5.277 0.782 5.563 Atomic orbital electron populations 1.69732 1.07992 1.30916 1.31210 1.26199 0.94961 1.02451 0.91377 0.86051 0.80620 0.78969 0.79883 1.18850 1.19563 1.17876 1.19600 0.98413 0.90402 1.36469 0.88776 1.18686 0.89399 0.92710 0.87928 1.22463 0.96715 0.96006 0.97209 1.21096 1.01760 0.81342 1.03960 1.44252 1.19442 1.06150 1.33802 1.77981 1.25037 0.85064 1.28983 1.73990 1.03287 1.26347 1.07290 1.23181 1.05241 0.89056 1.14209 1.20385 0.89905 0.96546 0.95983 1.20130 1.07582 0.88895 1.15008 0.89591 0.82594 0.83431 0.80924 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -16.67 10.87 55.55 0.60 -16.06 14 2 C 0.07 1.51 5.21 -17.33 -0.09 1.42 14 3 Si 0.92 15.61 29.59 -169.99 -5.03 10.58 14 4 H -0.26 -4.48 7.11 56.52 0.40 -4.07 14 5 H -0.27 -4.48 7.11 56.52 0.40 -4.08 14 6 H -0.26 -4.33 7.11 56.52 0.40 -3.92 14 7 C -0.42 -9.50 9.06 -38.06 -0.34 -9.85 14 8 H 0.09 2.02 7.90 -52.48 -0.41 1.61 14 9 C 0.12 2.84 5.72 -104.63 -0.60 2.24 14 10 C -0.10 -2.24 8.81 -37.56 -0.33 -2.57 14 11 C 0.04 0.85 11.09 -16.54 -0.18 0.67 14 12 N -0.26 -6.32 3.62 -10.78 -0.04 -6.36 14 13 N -0.20 -5.02 13.22 60.35 0.80 -4.22 14 14 N -0.25 -6.25 12.30 30.92 0.38 -5.87 14 15 C -0.15 -3.51 12.25 -16.59 -0.20 -3.71 14 16 C 0.09 2.27 6.85 -84.34 -0.58 1.70 14 17 C -0.29 -6.88 9.95 -38.22 -0.38 -7.27 14 18 H 0.29 5.62 8.30 -40.82 -0.34 5.28 14 19 H 0.16 3.31 6.26 -52.49 -0.33 2.98 14 20 H 0.15 2.74 8.06 -52.49 -0.42 2.31 14 21 H 0.17 3.36 8.06 -52.49 -0.42 2.93 14 22 H 0.12 2.64 8.06 -52.49 -0.42 2.22 14 LS Contribution 206.49 15.07 3.11 3.11 Total: -1.00 -26.92 206.49 -4.03 -30.95 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -1.15 Total: 5.25 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.71 Total: -17.37 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 1.74 Total: -32.52 kcal Atomic # 14 Polarization: 15.61 SS G_CDS: -5.03 Total: 10.58 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -26.92 -4.03 -30.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158702.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.891 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds