Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48507 * 109.47020 * 270.00653 * 3 2 1 5 5 H 1.48501 * 109.46787 * 30.00071 * 3 2 1 6 6 H 1.48494 * 109.47258 * 150.00223 * 3 2 1 7 7 C 1.37881 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00029 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99542 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46738 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.54408 * 55.00244 * 10 9 7 12 12 C 1.53179 * 109.54434 * 175.17893 * 10 9 7 13 13 C 1.53090 * 109.16577 * 176.93705 * 12 10 9 14 14 O 1.42902 * 109.41244 * 302.39131 * 13 12 10 15 15 C 1.42899 * 114.09845 * 61.15908 * 14 13 12 16 16 C 1.53090 * 109.41602 * 298.83901 * 15 14 13 17 17 H 1.09000 * 109.52544 * 177.52013 * 16 15 14 18 18 F 1.39901 * 109.52347 * 297.70671 * 16 15 14 19 19 H 0.97008 * 120.00156 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47108 * 60.00103 * 9 7 2 21 21 H 1.08997 * 109.47242 * 299.99947 * 9 7 2 22 22 H 1.09000 * 109.51851 * 296.84261 * 12 10 9 23 23 H 1.09000 * 109.51841 * 57.02722 * 12 10 9 24 24 H 1.08993 * 109.48129 * 62.37141 * 13 12 10 25 25 H 1.09002 * 109.48049 * 182.40929 * 13 12 10 26 26 H 1.08998 * 109.48536 * 58.82688 * 15 14 13 27 27 H 1.09012 * 109.48094 * 178.84985 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 1 3.5872 -3.1769 -0.8422 12 6 5.5484 -2.6404 -0.1229 13 6 6.0552 -4.0828 -0.0450 14 8 5.6242 -4.6720 1.1834 15 6 4.2045 -4.7388 1.3319 16 6 3.6232 -3.3228 1.3093 17 1 2.5366 -3.3738 1.3782 18 9 4.1276 -2.5930 2.3912 19 1 -0.4851 0.8401 0.0004 20 1 3.8752 -0.6805 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 5.8385 -2.2034 -1.0784 23 1 5.9801 -2.0580 0.6911 24 1 5.6552 -4.6544 -0.8824 25 1 7.1444 -4.0882 -0.0882 26 1 3.7801 -5.3191 0.5126 27 1 3.9603 -5.2171 2.2806 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214021.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = -114.943350 kcal Electronic energy + Delta-G solvation = -12138.020579 eV Core-core repulsion = 9809.589465 eV Total energy + Delta-G solvation = -2328.431113 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.87299 -38.58033 -34.59735 -32.24688 -30.46117 -28.59826 -24.48528 -23.17351 -21.14873 -19.26801 -16.91169 -16.14381 -15.99313 -15.20919 -14.84488 -14.61375 -13.94146 -13.27880 -12.81850 -12.45956 -12.22754 -11.70437 -11.54111 -11.39828 -10.84317 -10.62602 -10.24932 -9.98888 -9.76512 -9.71252 -9.11127 -8.92721 -8.55818 -6.07448 -4.05737 3.29940 3.37982 3.43631 4.04327 4.44172 5.00657 5.04770 5.20878 5.30863 5.31382 5.36919 5.60360 5.78390 5.84743 5.90373 6.23801 6.33155 6.33672 6.69489 6.72015 7.16336 7.38149 7.38574 7.74891 8.46736 8.93951 9.55366 11.05608 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.060439 B = 0.012042 C = 0.011308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.168809 B = 2324.618322 C = 2475.619601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.100 4.100 11 H 0.078 0.922 12 C -0.156 4.156 13 C 0.060 3.940 14 O -0.381 6.381 15 C 0.035 3.965 16 C 0.071 3.929 17 H 0.100 0.900 18 F -0.208 7.208 19 H 0.263 0.737 20 H 0.025 0.975 21 H 0.016 0.984 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.337 -6.800 -0.109 11.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.119 4.119 11 H 0.097 0.903 12 C -0.193 4.193 13 C -0.017 4.017 14 O -0.300 6.300 15 C -0.043 4.043 16 C 0.035 3.965 17 H 0.117 0.883 18 F -0.189 7.189 19 H 0.073 0.927 20 H 0.043 0.957 21 H 0.034 0.966 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.321 -6.731 0.059 11.498 hybrid contribution 0.080 1.125 -0.223 1.149 sum 9.401 -5.606 -0.164 10.947 Atomic orbital electron populations 1.69909 1.06285 1.26961 1.50984 1.24998 0.94716 0.99205 0.94384 0.86788 0.80565 0.83611 0.78444 1.20328 1.21327 1.18883 1.21085 0.89264 0.94416 1.51204 0.91027 1.19602 0.97280 0.90867 0.96986 1.21648 0.93713 1.00552 0.95971 0.90331 1.22305 0.97259 0.96947 1.02835 1.22628 0.99436 0.93320 0.86325 1.87898 1.21360 1.81374 1.39381 1.23287 0.81920 0.96337 1.02720 1.22184 0.99844 0.89678 0.84807 0.88251 1.92747 1.89487 1.79522 1.57136 0.92703 0.95694 0.96593 0.90923 0.90940 0.93360 0.89294 0.91776 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.92 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 15 7 C -0.52 -14.61 9.01 -34.44 -0.31 -14.93 15 8 H 0.07 2.10 7.33 -52.49 -0.38 1.72 15 9 C -0.01 -0.24 3.45 -27.88 -0.10 -0.34 15 10 C -0.10 -1.96 2.08 -90.44 -0.19 -2.15 15 11 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 12 C -0.16 -2.57 5.29 -26.59 -0.14 -2.71 15 13 C 0.06 0.85 6.84 37.20 0.25 1.10 15 14 O -0.38 -6.25 10.74 -35.23 -0.38 -6.62 15 15 C 0.03 0.53 6.59 37.20 0.25 0.78 15 16 C 0.07 1.36 3.39 -26.59 -0.09 1.27 15 17 H 0.10 1.99 7.08 -51.93 -0.37 1.62 15 18 F -0.21 -4.49 15.98 2.25 0.04 -4.46 15 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 20 H 0.02 0.63 6.65 -51.93 -0.35 0.28 15 21 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 15 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.07 1.28 7.94 -51.93 -0.41 0.87 15 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.10 1.35 8.14 -51.92 -0.42 0.93 15 LS Contribution 224.74 15.07 3.39 3.39 Total: -1.00 -31.06 224.74 -4.88 -35.94 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.61 Total: -3.55 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.42 Total: -15.08 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.38 Total: -6.62 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.04 Total: -4.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.06 -4.88 -35.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214021.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.002 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds