Wall clock time and date at job start Mon Mar 30 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48507 * 109.47020 * 270.00653 * 3 2 1 5 5 H 1.48501 * 109.46787 * 30.00071 * 3 2 1 6 6 H 1.48494 * 109.47258 * 150.00223 * 3 2 1 7 7 C 1.37881 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00029 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99542 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46738 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.54408 * 55.00244 * 10 9 7 12 12 C 1.53179 * 109.54434 * 175.17893 * 10 9 7 13 13 C 1.53090 * 109.16577 * 176.93705 * 12 10 9 14 14 O 1.42902 * 109.41244 * 302.39131 * 13 12 10 15 15 C 1.42899 * 114.09845 * 61.15908 * 14 13 12 16 16 C 1.53090 * 109.41602 * 298.83901 * 15 14 13 17 17 H 1.09000 * 109.52544 * 177.52013 * 16 15 14 18 18 F 1.39901 * 109.52347 * 297.70671 * 16 15 14 19 19 H 0.97008 * 120.00156 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47108 * 60.00103 * 9 7 2 21 21 H 1.08997 * 109.47242 * 299.99947 * 9 7 2 22 22 H 1.09000 * 109.51851 * 296.84261 * 12 10 9 23 23 H 1.09000 * 109.51841 * 57.02722 * 12 10 9 24 24 H 1.08993 * 109.48129 * 62.37141 * 13 12 10 25 25 H 1.09002 * 109.48049 * 182.40929 * 13 12 10 26 26 H 1.08998 * 109.48536 * 58.82688 * 15 14 13 27 27 H 1.09012 * 109.48094 * 178.84985 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 1 3.5872 -3.1769 -0.8422 12 6 5.5484 -2.6404 -0.1229 13 6 6.0552 -4.0828 -0.0450 14 8 5.6242 -4.6720 1.1834 15 6 4.2045 -4.7388 1.3319 16 6 3.6232 -3.3228 1.3093 17 1 2.5366 -3.3738 1.3782 18 9 4.1276 -2.5930 2.3912 19 1 -0.4851 0.8401 0.0004 20 1 3.8752 -0.6805 0.8888 21 1 3.8745 -0.6801 -0.8911 22 1 5.8385 -2.2034 -1.0784 23 1 5.9801 -2.0580 0.6911 24 1 5.6552 -4.6544 -0.8824 25 1 7.1444 -4.0882 -0.0882 26 1 3.7801 -5.3191 0.5126 27 1 3.9603 -5.2171 2.2806 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261214021.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:47 Heat of formation + Delta-G solvation = -135.719034 kcal Electronic energy + Delta-G solvation = -12138.921480 eV Core-core repulsion = 9809.589465 eV Total energy + Delta-G solvation = -2329.332014 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.49883 -39.85947 -36.28473 -34.27056 -31.75055 -30.40159 -26.18012 -24.50390 -22.86631 -20.78317 -18.99504 -17.62069 -17.29361 -16.70127 -16.50860 -16.05971 -15.68179 -14.85853 -14.59488 -14.10420 -13.92283 -13.36340 -13.11855 -12.83978 -12.48358 -12.35748 -11.91210 -11.76945 -11.51444 -11.24018 -10.98478 -10.76281 -10.32420 -8.31180 -6.33840 1.31601 1.35179 1.46578 2.33997 2.89355 3.04270 3.65934 3.66507 3.85835 3.94436 4.14313 4.41263 4.48729 4.59059 4.68660 4.86817 4.91951 4.96032 5.08102 5.13250 5.32731 5.55319 5.63996 6.20270 6.23734 6.71895 7.30626 8.84846 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.060439 B = 0.012042 C = 0.011308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.168809 B = 2324.618322 C = 2475.619601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.525 4.525 8 H 0.043 0.957 9 C -0.008 4.008 10 C -0.101 4.101 11 H 0.086 0.914 12 C -0.151 4.151 13 C 0.059 3.941 14 O -0.394 6.394 15 C 0.043 3.957 16 C 0.062 3.938 17 H 0.078 0.922 18 F -0.225 7.225 19 H 0.266 0.734 20 H 0.010 0.990 21 H 0.024 0.976 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.291 -7.160 -0.748 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.563 4.563 8 H 0.061 0.939 9 C -0.045 4.045 10 C -0.120 4.120 11 H 0.104 0.896 12 C -0.189 4.189 13 C -0.017 4.017 14 O -0.313 6.313 15 C -0.034 4.034 16 C 0.025 3.975 17 H 0.096 0.904 18 F -0.206 7.206 19 H 0.075 0.925 20 H 0.029 0.971 21 H 0.042 0.958 22 H 0.110 0.890 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.134 0.866 26 H 0.107 0.893 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.292 -7.104 -0.586 13.354 hybrid contribution -0.582 1.187 -0.027 1.323 sum 10.710 -5.917 -0.612 12.251 Atomic orbital electron populations 1.70047 1.08037 1.28032 1.52779 1.25918 0.95552 1.03222 0.94338 0.85763 0.79339 0.78965 0.79250 1.18715 1.21052 1.18015 1.21427 0.91567 0.93309 1.49966 0.93921 1.19533 0.94419 0.94106 0.96440 1.21613 0.96253 0.97660 0.96487 0.89591 1.22274 0.94361 0.98955 1.03270 1.22815 1.01111 0.91527 0.86258 1.87894 1.21411 1.81349 1.40667 1.23269 0.81708 0.93664 1.04713 1.22356 0.99054 0.91992 0.84073 0.90370 1.92707 1.89584 1.80311 1.58046 0.92550 0.97145 0.95751 0.89023 0.92483 0.91226 0.86587 0.89290 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.39 13.96 21.45 0.30 -59.09 15 2 C 0.01 0.39 5.47 84.66 0.46 0.86 15 3 Si 0.94 45.16 27.47 68.60 1.88 47.05 15 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 15 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 15 6 H -0.26 -11.82 6.54 99.48 0.65 -11.17 15 7 C -0.52 -29.84 9.01 25.60 0.23 -29.61 15 8 H 0.04 2.60 7.33 -2.91 -0.02 2.58 15 9 C -0.01 -0.36 3.45 29.85 0.10 -0.26 15 10 C -0.10 -3.83 2.08 -10.67 -0.02 -3.86 15 11 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 12 C -0.15 -4.57 5.29 30.68 0.16 -4.41 15 13 C 0.06 1.45 6.84 72.01 0.49 1.94 15 14 O -0.39 -11.68 10.74 -148.98 -1.60 -13.28 15 15 C 0.04 1.24 6.59 72.01 0.47 1.72 15 16 C 0.06 2.32 3.39 30.68 0.10 2.42 15 17 H 0.08 3.21 7.08 -2.39 -0.02 3.20 15 18 F -0.23 -9.71 15.98 44.97 0.72 -9.00 15 19 H 0.27 15.58 8.31 -92.70 -0.77 14.81 15 20 H 0.01 0.51 6.65 -2.39 -0.02 0.50 15 21 H 0.02 1.10 7.57 -2.39 -0.02 1.08 15 22 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.06 1.90 7.94 -2.39 -0.02 1.88 15 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.12 2.26 8.14 -2.39 -0.02 2.24 15 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.11 2.86 8.14 -2.38 -0.02 2.84 15 Total: -1.00 -66.84 224.74 4.40 -62.45 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.09 Total: 3.07 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 2.01 Total: -31.20 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.30 Total: -59.09 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.60 Total: -13.28 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 0.72 Total: -9.00 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -66.84 4.40 -62.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214021.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.272 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds