Wall clock time and date at job start Mon Mar 30 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.51866 * 305.12562 * 10 9 7 12 12 C 1.53089 * 109.51890 * 65.31434 * 10 9 7 13 13 O 1.42901 * 109.41368 * 177.51431 * 12 10 9 14 14 C 1.42909 * 114.09811 * 298.84347 * 13 12 10 15 15 C 1.53088 * 109.41634 * 61.15693 * 14 13 12 16 16 C 1.53172 * 109.52019 * 184.99733 * 10 9 7 17 17 H 1.09004 * 109.54846 * 302.98060 * 16 10 9 18 18 F 1.39897 * 109.54483 * 63.16335 * 16 10 9 19 19 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 21 21 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 22 22 H 1.08996 * 109.48270 * 297.49483 * 12 10 9 23 23 H 1.09005 * 109.48502 * 57.53374 * 12 10 9 24 24 H 1.09004 * 109.47753 * 301.17022 * 14 13 12 25 25 H 1.09005 * 109.48056 * 181.14074 * 14 13 12 26 26 H 1.08995 * 109.52235 * 182.48799 * 15 14 13 27 27 H 1.08996 * 109.57547 * 62.32519 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9313 -3.5547 -0.8408 12 6 3.0358 -3.6592 1.3105 13 8 3.9226 -4.7796 1.3329 14 6 3.2643 -6.0462 1.2659 15 6 2.4831 -6.1449 -0.0469 16 6 1.4849 -4.9857 -0.1263 17 1 0.7628 -5.0700 0.6859 18 9 0.8153 -5.0259 -1.3539 19 1 -0.4850 -0.8401 0.0004 20 1 0.6247 -2.5570 0.8897 21 1 0.6242 -2.5567 -0.8903 22 1 3.6127 -2.7375 1.3852 23 1 2.3454 -3.7253 2.1515 24 1 2.5769 -6.1435 2.1063 25 1 4.0059 -6.8440 1.3085 26 1 1.9447 -7.0921 -0.0800 27 1 3.1739 -6.0889 -0.8881 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261229930.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:00 Heat of formation + Delta-G solvation = -125.029115 kcal Electronic energy + Delta-G solvation = -12005.211522 eV Core-core repulsion = 9676.343057 eV Total energy + Delta-G solvation = -2328.868465 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.16872 -38.78172 -34.38284 -32.43326 -31.28286 -26.65847 -24.24232 -23.66213 -21.46810 -19.88287 -16.82362 -16.24235 -15.85182 -15.51981 -14.78888 -14.26932 -13.80719 -13.70510 -12.84815 -12.61562 -12.18845 -11.79947 -11.63440 -11.16184 -10.81358 -10.53756 -10.32218 -10.14450 -9.90199 -9.64312 -9.21872 -8.53729 -8.34299 -6.38476 -4.08585 3.43709 3.47519 3.60728 4.17527 4.51942 4.70716 4.94428 5.00524 5.24615 5.35654 5.42485 5.44423 5.72999 5.75601 5.92234 6.02327 6.28108 6.43087 6.63039 6.71350 7.29358 7.42152 7.52310 8.14689 8.43223 8.85015 9.64077 11.02033 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.054044 B = 0.011347 C = 0.009875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.972137 B = 2466.974497 C = 2834.760641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.074 2.926 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.602 4.602 8 H 0.053 0.947 9 C 0.014 3.986 10 C -0.132 4.132 11 H 0.079 0.921 12 C 0.077 3.923 13 O -0.390 6.390 14 C 0.066 3.934 15 C -0.181 4.181 16 C 0.090 3.910 17 H 0.076 0.924 18 F -0.213 7.213 19 H 0.269 0.731 20 H 0.009 0.991 21 H 0.017 0.983 22 H 0.111 0.889 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 -10.062 2.356 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.902 3.098 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.640 4.640 8 H 0.071 0.929 9 C -0.023 4.023 10 C -0.151 4.151 11 H 0.097 0.903 12 C 0.001 3.999 13 O -0.308 6.308 14 C -0.012 4.012 15 C -0.219 4.219 16 C 0.054 3.946 17 H 0.094 0.906 18 F -0.194 7.194 19 H 0.080 0.920 20 H 0.027 0.973 21 H 0.036 0.964 22 H 0.129 0.871 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.715 -8.398 2.338 9.911 hybrid contribution -0.270 -1.753 -0.191 1.784 sum 4.445 -10.151 2.147 11.288 Atomic orbital electron populations 1.70721 1.06942 1.30703 1.46486 1.25858 0.96529 1.02789 0.93678 0.83478 0.74491 0.74823 0.76989 1.21428 1.21327 1.21332 1.22053 0.94326 0.91670 1.55991 0.92914 1.19229 0.94029 0.92433 0.96638 1.22326 0.99083 0.94314 0.99378 0.90298 1.22695 0.92940 0.88675 0.95634 1.87920 1.34480 1.13952 1.94489 1.22423 0.96463 0.87127 0.95149 1.22826 0.99473 0.98901 1.00717 1.21741 0.93285 0.96849 0.82707 0.90642 1.92778 1.82316 1.97515 1.46767 0.92017 0.97316 0.96438 0.87128 0.93480 0.93293 0.88927 0.90534 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.08 13.65 55.43 0.76 -27.33 15 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 15 3 Si 1.07 25.39 29.90 -169.99 -5.08 20.30 15 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.60 -16.93 8.44 -34.44 -0.29 -17.22 15 8 H 0.05 1.45 7.08 -52.49 -0.37 1.08 15 9 C 0.01 0.35 3.72 -27.88 -0.10 0.25 15 10 C -0.13 -2.77 2.12 -90.48 -0.19 -2.96 15 11 H 0.08 1.76 8.14 -51.93 -0.42 1.33 15 12 C 0.08 1.46 5.90 37.20 0.22 1.68 15 13 O -0.39 -6.78 10.77 -35.23 -0.38 -7.16 15 14 C 0.07 0.89 6.84 37.20 0.25 1.15 15 15 C -0.18 -2.60 5.88 -26.59 -0.16 -2.76 15 16 C 0.09 1.64 3.34 -26.55 -0.09 1.55 15 17 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 18 F -0.21 -4.33 16.63 2.25 0.04 -4.29 15 19 H 0.27 8.29 7.22 -40.82 -0.29 7.99 15 20 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 15 21 H 0.02 0.48 7.63 -51.93 -0.40 0.09 15 22 H 0.11 2.25 7.05 -51.93 -0.37 1.88 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 15 27 H 0.08 1.19 8.14 -51.93 -0.42 0.76 15 LS Contribution 227.96 15.07 3.44 3.44 Total: -1.00 -30.76 227.96 -5.29 -36.05 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.60 Total: -3.04 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.45 Total: -17.97 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.76 Total: -27.33 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.38 Total: -7.16 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.04 Total: -4.29 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.76 -5.29 -36.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261229930.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.982 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds