Wall clock time and date at job start Mon Mar 30 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.51866 * 305.12562 * 10 9 7 12 12 C 1.53089 * 109.51890 * 65.31434 * 10 9 7 13 13 O 1.42901 * 109.41368 * 177.51431 * 12 10 9 14 14 C 1.42909 * 114.09811 * 298.84347 * 13 12 10 15 15 C 1.53088 * 109.41634 * 61.15693 * 14 13 12 16 16 C 1.53172 * 109.52019 * 184.99733 * 10 9 7 17 17 H 1.09004 * 109.54846 * 302.98060 * 16 10 9 18 18 F 1.39897 * 109.54483 * 63.16335 * 16 10 9 19 19 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 21 21 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 22 22 H 1.08996 * 109.48270 * 297.49483 * 12 10 9 23 23 H 1.09005 * 109.48502 * 57.53374 * 12 10 9 24 24 H 1.09004 * 109.47753 * 301.17022 * 14 13 12 25 25 H 1.09005 * 109.48056 * 181.14074 * 14 13 12 26 26 H 1.08995 * 109.52235 * 182.48799 * 15 14 13 27 27 H 1.08996 * 109.57547 * 62.32519 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9313 -3.5547 -0.8408 12 6 3.0358 -3.6592 1.3105 13 8 3.9226 -4.7796 1.3329 14 6 3.2643 -6.0462 1.2659 15 6 2.4831 -6.1449 -0.0469 16 6 1.4849 -4.9857 -0.1263 17 1 0.7628 -5.0700 0.6859 18 9 0.8153 -5.0259 -1.3539 19 1 -0.4850 -0.8401 0.0004 20 1 0.6247 -2.5570 0.8897 21 1 0.6242 -2.5567 -0.8903 22 1 3.6127 -2.7375 1.3852 23 1 2.3454 -3.7253 2.1515 24 1 2.5769 -6.1435 2.1063 25 1 4.0059 -6.8440 1.3085 26 1 1.9447 -7.0921 -0.0800 27 1 3.1739 -6.0889 -0.8881 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261229930.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:00 Heat of formation + Delta-G solvation = -144.955496 kcal Electronic energy + Delta-G solvation = -12006.075594 eV Core-core repulsion = 9676.343057 eV Total energy + Delta-G solvation = -2329.732537 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.72080 -40.17798 -36.31365 -34.11966 -32.82664 -28.52275 -25.81731 -25.38460 -23.10647 -21.41708 -18.96007 -17.68069 -17.27305 -16.98892 -16.25280 -15.79004 -15.58175 -15.24067 -14.66138 -14.35840 -13.71404 -13.65825 -13.23868 -12.69947 -12.56480 -12.10668 -11.99873 -11.91525 -11.53231 -11.24298 -10.71357 -10.60049 -10.51128 -8.70785 -6.41704 1.52407 1.61638 1.78139 2.54932 2.87579 3.14827 3.41145 3.52278 3.73027 3.85879 3.88590 4.16129 4.42379 4.55363 4.63723 4.75001 4.80275 4.82879 5.01643 5.09188 5.19565 5.38745 5.93936 6.14699 6.19292 6.53837 7.40309 8.69797 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.054044 B = 0.011347 C = 0.009875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.972137 B = 2466.974497 C = 2834.760641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.039 4.039 3 Si 1.122 2.878 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.612 4.612 8 H 0.056 0.944 9 C 0.018 3.982 10 C -0.128 4.128 11 H 0.061 0.939 12 C 0.089 3.911 13 O -0.398 6.398 14 C 0.058 3.942 15 C -0.171 4.171 16 C 0.084 3.916 17 H 0.088 0.912 18 F -0.229 7.229 19 H 0.255 0.745 20 H -0.003 1.003 21 H -0.014 1.014 22 H 0.093 0.907 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 -11.050 3.049 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.236 4.236 3 Si 0.943 3.057 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.649 4.649 8 H 0.074 0.926 9 C -0.019 4.019 10 C -0.147 4.147 11 H 0.080 0.920 12 C 0.012 3.988 13 O -0.317 6.317 14 C -0.018 4.018 15 C -0.208 4.208 16 C 0.048 3.952 17 H 0.106 0.894 18 F -0.210 7.210 19 H 0.064 0.936 20 H 0.016 0.984 21 H 0.004 0.996 22 H 0.111 0.889 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.146 0.854 26 H 0.128 0.872 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.990 -9.422 3.032 11.569 hybrid contribution -0.680 -1.530 -0.418 1.726 sum 5.310 -10.952 2.614 12.449 Atomic orbital electron populations 1.70864 1.08053 1.29850 1.48848 1.27446 0.96563 1.06947 0.92683 0.82872 0.74349 0.70922 0.77518 1.19228 1.20174 1.20741 1.22440 0.94716 0.92827 1.54948 0.92613 1.19103 0.94422 0.93972 0.94453 1.22192 0.98079 0.94363 1.00087 0.92046 1.22381 0.92677 0.89252 0.94498 1.87907 1.34569 1.14813 1.94462 1.22802 0.97791 0.86022 0.95191 1.22794 0.98538 0.98377 1.01125 1.21934 0.94186 0.96759 0.82328 0.89442 1.92748 1.82792 1.97556 1.47895 0.93594 0.98441 0.99610 0.88909 0.92645 0.91459 0.85368 0.87231 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.65 21.45 0.29 -58.67 15 2 C -0.04 -2.28 5.46 84.65 0.46 -1.82 15 3 Si 1.12 50.67 29.90 68.60 2.05 52.72 15 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.61 -34.88 8.44 25.60 0.22 -34.66 15 8 H 0.06 3.08 7.08 -2.91 -0.02 3.06 15 9 C 0.02 0.93 3.72 29.85 0.11 1.04 15 10 C -0.13 -5.39 2.12 -10.71 -0.02 -5.41 15 11 H 0.06 2.77 8.14 -2.39 -0.02 2.75 15 12 C 0.09 3.30 5.90 72.01 0.42 3.73 15 13 O -0.40 -12.90 10.77 -148.98 -1.60 -14.51 15 14 C 0.06 1.36 6.84 72.01 0.49 1.85 15 15 C -0.17 -4.36 5.88 30.69 0.18 -4.18 15 16 C 0.08 2.94 3.34 30.71 0.10 3.04 15 17 H 0.09 2.84 8.14 -2.38 -0.02 2.82 15 18 F -0.23 -9.26 16.63 44.97 0.75 -8.51 15 19 H 0.25 16.27 7.22 -92.71 -0.67 15.60 15 20 H 0.00 -0.15 8.01 -2.38 -0.02 -0.16 15 21 H -0.01 -0.84 7.63 -2.39 -0.02 -0.86 15 22 H 0.09 3.75 7.05 -2.39 -0.02 3.74 15 23 H 0.06 1.96 8.14 -2.38 -0.02 1.94 15 24 H 0.07 1.37 8.14 -2.38 -0.02 1.35 15 25 H 0.13 2.16 8.14 -2.38 -0.02 2.14 15 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 Total: -1.00 -66.88 227.96 4.70 -62.18 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.24 Total: 3.19 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 1.97 Total: -36.41 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.29 Total: -58.67 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.60 Total: -14.51 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 0.75 Total: -8.51 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -66.88 4.70 -62.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261229930.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.772 kcal (2) G-P(sol) polarization free energy of solvation -66.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds