Wall clock time and date at job start Mon Mar 30 2020 02:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30994 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48502 * 109.47467 * 90.00024 * 3 2 1 5 5 H 1.48507 * 109.46792 * 209.99735 * 3 2 1 6 6 H 1.48496 * 109.47548 * 329.99352 * 3 2 1 7 7 C 1.39830 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00193 * 15.88976 * 7 2 1 9 9 C 1.40560 * 120.00182 * 195.88587 * 7 2 1 10 10 C 1.41414 * 126.70005 * 19.58549 * 9 7 2 11 11 N 1.30701 * 108.75737 * 179.87919 * 10 9 7 12 12 N 1.39672 * 109.86484 * 0.39160 * 11 10 9 13 13 C 1.36534 * 133.12911 * 179.77397 * 12 11 10 14 14 C 1.35555 * 119.71612 * 179.97438 * 13 12 11 15 15 N 1.33156 * 121.22381 * 359.97438 * 14 13 12 16 16 C 1.31828 * 121.08928 * 0.02562 * 15 14 13 17 17 C 1.37243 * 108.11182 * 359.75387 * 12 11 10 18 18 H 0.96998 * 120.00266 * 174.97683 * 1 2 3 19 19 H 1.07997 * 125.61853 * 0.03870 * 10 9 7 20 20 H 1.07994 * 120.14218 * 359.94932 * 13 12 11 21 21 H 1.08004 * 119.38541 * 180.02562 * 14 13 12 22 22 H 1.08000 * 120.12843 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.4914 2.0465 1.4001 5 1 3.5415 1.4401 -0.7000 6 1 1.4414 2.6527 -0.7001 7 6 2.0091 -1.2110 0.0005 8 1 1.5000 -2.1286 -0.2551 9 6 3.3744 -1.2341 0.3337 10 6 4.0876 -0.2418 1.0454 11 7 5.3331 -0.6208 1.1608 12 7 5.5129 -1.8571 0.5363 13 6 6.5971 -2.6700 0.3701 14 6 6.4624 -3.8416 -0.2983 15 7 5.2879 -4.2195 -0.7991 16 6 4.2152 -3.4657 -0.6620 17 6 4.3055 -2.2523 0.0171 18 1 -0.4850 -0.8368 -0.0735 19 1 3.6711 0.6765 1.4322 20 1 7.5581 -2.3807 0.7691 21 1 7.3236 -4.4808 -0.4263 22 1 3.2702 -3.7875 -1.0741 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239863.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:23 Heat of formation + Delta-G solvation = 105.633950 kcal Electronic energy + Delta-G solvation = -10957.852642 eV Core-core repulsion = 8900.789448 eV Total energy + Delta-G solvation = -2057.063193 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.84998 -37.10623 -34.07101 -32.18803 -30.14103 -29.01309 -24.75950 -23.62453 -21.88093 -20.33060 -18.32656 -16.71722 -16.44695 -14.74048 -14.59493 -14.41718 -13.99438 -13.27226 -12.87878 -12.14680 -11.92086 -11.67568 -11.14808 -10.34598 -10.16682 -9.78529 -9.47486 -9.15865 -8.87807 -8.55881 -7.54651 -7.09733 -4.34684 1.55263 2.03382 3.00724 3.18315 3.28901 3.38525 3.66440 3.88874 4.35743 5.03215 5.09924 5.29714 5.54305 5.78017 6.07474 6.20423 6.48651 6.64335 7.09413 7.21571 7.42345 7.85991 8.04583 8.11501 8.55148 8.66135 8.77083 9.90572 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.059871 B = 0.014194 C = 0.011936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.558659 B = 1972.135525 C = 2345.272860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.041 3.959 3 Si 1.064 2.936 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.282 1.282 7 C -0.471 4.471 8 H 0.082 0.918 9 C 0.024 3.976 10 C -0.047 4.047 11 N -0.282 5.282 12 N -0.291 5.291 13 C 0.026 3.974 14 C 0.011 3.989 15 N -0.543 5.543 16 C 0.216 3.784 17 C -0.130 4.130 18 H 0.288 0.712 19 H 0.176 0.824 20 H 0.149 0.851 21 H 0.155 0.845 22 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -0.760 -0.101 5.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.179 4.179 3 Si 0.890 3.110 4 H -0.199 1.199 5 H -0.188 1.188 6 H -0.208 1.208 7 C -0.505 4.505 8 H 0.100 0.900 9 C 0.010 3.990 10 C -0.226 4.226 11 N -0.109 5.109 12 N -0.072 5.072 13 C -0.098 4.098 14 C -0.127 4.127 15 N -0.259 5.259 16 C 0.040 3.960 17 C -0.242 4.242 18 H 0.100 0.900 19 H 0.192 0.808 20 H 0.166 0.834 21 H 0.173 0.827 22 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.481 0.358 0.026 6.491 hybrid contribution -0.556 -1.153 0.201 1.296 sum 5.925 -0.795 0.227 5.982 Atomic orbital electron populations 1.70595 1.07702 1.33195 1.31942 1.27130 0.95752 1.04105 0.90931 0.83772 0.75727 0.73411 0.78076 1.19914 1.18782 1.20811 1.19858 0.92588 0.96892 1.41142 0.89975 1.18052 0.93739 0.90766 0.96401 1.23900 0.91588 1.02197 1.04900 1.76633 1.20056 0.94829 1.19414 1.45055 1.07027 1.14364 1.40712 1.21886 0.91077 0.92532 1.04355 1.21724 0.96690 0.94405 0.99922 1.68210 0.98984 1.33745 1.24921 1.22278 0.96896 0.86922 0.89953 1.19836 0.87408 1.02739 1.14252 0.90019 0.80780 0.83384 0.82743 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.54 13.66 55.54 0.76 -19.78 14 2 C 0.04 1.01 5.50 -17.31 -0.10 0.91 14 3 Si 1.06 22.45 24.91 -169.99 -4.23 18.21 14 4 H -0.27 -5.32 6.59 56.52 0.37 -4.94 14 5 H -0.26 -5.63 6.66 56.52 0.38 -5.25 14 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 14 7 C -0.47 -11.98 9.74 -38.11 -0.37 -12.35 14 8 H 0.08 2.11 8.06 -52.48 -0.42 1.68 14 9 C 0.02 0.60 5.49 -106.55 -0.59 0.02 14 10 C -0.05 -1.12 9.28 -16.82 -0.16 -1.28 14 11 N -0.28 -6.76 12.56 30.93 0.39 -6.37 14 12 N -0.29 -6.80 3.92 -10.25 -0.04 -6.84 14 13 C 0.03 0.51 11.27 -16.42 -0.18 0.33 14 14 C 0.01 0.20 11.08 -17.94 -0.20 0.01 14 15 N -0.54 -11.22 10.46 -13.34 -0.14 -11.36 14 16 C 0.22 4.69 11.28 -17.14 -0.19 4.50 14 17 C -0.13 -3.14 6.82 -83.77 -0.57 -3.71 14 18 H 0.29 7.08 8.73 -40.82 -0.36 6.73 14 19 H 0.18 3.83 4.25 -52.49 -0.22 3.61 14 20 H 0.15 2.33 8.06 -52.49 -0.42 1.90 14 21 H 0.16 2.19 8.06 -52.48 -0.42 1.77 14 22 H 0.16 3.07 8.06 -52.49 -0.42 2.65 14 LS Contribution 201.55 15.07 3.04 3.04 Total: -1.00 -28.21 201.55 -3.71 -31.91 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -1.12 Total: 2.77 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.36 Total: -11.58 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.97 Total: -44.35 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.23 Total: 18.21 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -28.21 -3.71 -31.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239863.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.547 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds