Wall clock time and date at job start Mon Mar 30 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.54039 * 54.99927 * 10 9 7 12 12 C 1.53177 * 109.54206 * 175.17594 * 10 9 7 13 13 C 1.53093 * 109.16628 * 176.84505 * 12 10 9 14 14 O 1.42906 * 109.41409 * 302.39388 * 13 12 10 15 15 C 1.42906 * 114.09309 * 61.15500 * 14 13 12 16 16 C 1.53105 * 109.48850 * 298.88537 * 15 14 13 17 17 H 1.08996 * 109.45244 * 297.61620 * 16 15 14 18 18 F 1.39899 * 109.59373 * 177.42919 * 16 15 14 19 19 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 21 21 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 22 22 H 1.09000 * 109.52563 * 296.75528 * 12 10 9 23 23 H 1.09005 * 109.52349 * 56.94172 * 12 10 9 24 24 H 1.09004 * 109.47575 * 62.37638 * 13 12 10 25 25 H 1.08996 * 109.48366 * 182.40718 * 13 12 10 26 26 H 1.08994 * 109.48402 * 58.82906 * 15 14 13 27 27 H 1.09004 * 109.47863 * 178.84598 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9302 -3.5562 0.8409 12 6 1.4852 -4.9863 0.1209 13 6 2.4807 -6.1466 0.0408 14 8 3.2053 -6.0667 -1.1883 15 6 3.9730 -4.8705 -1.3363 16 6 3.0389 -3.6577 -1.3107 17 1 2.3504 -3.7119 -2.1538 18 9 3.7933 -2.4826 -1.3965 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5568 -0.8902 21 1 0.6248 -2.5571 0.8897 22 1 0.9626 -5.0200 1.0768 23 1 0.7641 -5.0683 -0.6925 24 1 3.1766 -6.0868 0.8776 25 1 1.9408 -7.0924 0.0837 26 1 4.6885 -4.7941 -0.5176 27 1 4.5084 -4.8973 -2.2855 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261268468.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:51 Heat of formation + Delta-G solvation = -134.739522 kcal Electronic energy + Delta-G solvation = -12100.742816 eV Core-core repulsion = 9771.453276 eV Total energy + Delta-G solvation = -2329.289539 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.44871 -40.05219 -36.19288 -34.20824 -31.53233 -29.97300 -26.17575 -24.30296 -23.17903 -21.22936 -18.53817 -17.45721 -17.37340 -16.69047 -16.33470 -16.03915 -15.92281 -14.70221 -14.28574 -13.90666 -13.65549 -13.35887 -13.22287 -12.82254 -12.55432 -12.23945 -12.05620 -11.87827 -11.49622 -11.12538 -10.89212 -10.55075 -10.27915 -8.17498 -6.24354 1.38003 1.41216 1.49039 2.42613 2.85006 3.15884 3.55979 3.66830 3.90808 3.94707 4.16881 4.39200 4.48088 4.59379 4.72883 4.80233 4.97094 5.08734 5.14222 5.24862 5.48621 5.65861 5.84113 6.14394 6.27620 6.91092 7.43417 8.94575 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.063877 B = 0.011815 C = 0.010409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.236605 B = 2369.362739 C = 2689.449320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.071 0.929 9 C 0.032 3.968 10 C -0.108 4.108 11 H 0.068 0.932 12 C -0.144 4.144 13 C 0.059 3.941 14 O -0.385 6.385 15 C 0.048 3.952 16 C 0.069 3.931 17 H 0.071 0.929 18 F -0.213 7.213 19 H 0.261 0.739 20 H -0.010 1.010 21 H -0.003 1.003 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -10.449 -0.505 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.201 4.201 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.089 0.911 9 C -0.005 4.005 10 C -0.127 4.127 11 H 0.086 0.914 12 C -0.182 4.182 13 C -0.017 4.017 14 O -0.303 6.303 15 C -0.029 4.029 16 C 0.032 3.968 17 H 0.089 0.911 18 F -0.194 7.194 19 H 0.069 0.931 20 H 0.008 0.992 21 H 0.015 0.985 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.140 0.860 26 H 0.088 0.912 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.202 -10.458 -0.642 12.176 hybrid contribution -0.084 1.568 0.175 1.580 sum 6.117 -8.890 -0.467 10.801 Atomic orbital electron populations 1.70093 1.07632 1.27501 1.52742 1.25924 0.95671 1.03131 0.95330 0.85609 0.78347 0.78735 0.79039 1.19705 1.20868 1.19202 1.21904 0.94241 0.91869 1.48770 0.91128 1.19020 0.93795 0.92688 0.95014 1.21769 0.98132 0.96292 0.96503 0.91383 1.22246 0.99034 0.93552 1.03382 1.22842 0.93620 0.99036 0.86203 1.87902 1.63736 1.38221 1.40475 1.23135 0.92444 0.82919 1.04402 1.22214 0.93111 0.81858 0.99573 0.91129 1.92752 1.78128 1.51071 1.97467 0.93054 0.99188 0.98453 0.89723 0.91790 0.91705 0.85959 0.91215 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.42 13.29 21.45 0.28 -58.13 15 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 15 3 Si 0.96 46.14 29.54 68.60 2.03 48.17 15 4 H -0.27 -12.81 7.11 99.48 0.71 -12.11 15 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 7 C -0.53 -30.74 8.03 25.60 0.21 -30.53 15 8 H 0.07 4.02 5.92 -2.91 -0.02 4.01 15 9 C 0.03 1.68 4.46 29.85 0.13 1.82 15 10 C -0.11 -4.36 2.13 -10.68 -0.02 -4.38 15 11 H 0.07 2.74 8.14 -2.39 -0.02 2.72 15 12 C -0.14 -4.53 5.42 30.68 0.17 -4.37 15 13 C 0.06 1.45 6.84 72.01 0.49 1.94 15 14 O -0.38 -10.85 10.77 -148.98 -1.60 -12.45 15 15 C 0.05 1.39 6.58 72.02 0.47 1.86 15 16 C 0.07 2.62 3.44 30.69 0.11 2.73 15 17 H 0.07 2.76 8.14 -2.39 -0.02 2.74 15 18 F -0.21 -9.47 14.11 44.97 0.63 -8.84 15 19 H 0.26 15.34 8.31 -92.71 -0.77 14.57 15 20 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 21 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 22 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.06 2.08 8.14 -2.38 -0.02 2.06 15 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.12 2.30 8.14 -2.39 -0.02 2.28 15 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 27 H 0.12 2.88 8.14 -2.38 -0.02 2.86 15 Total: -1.00 -66.58 227.03 4.50 -62.08 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: 1.14 Total: -0.12 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 2.02 Total: -30.71 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.28 Total: -58.13 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.60 Total: -12.45 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 0.63 Total: -8.84 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -66.58 4.50 -62.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268468.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.657 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds