Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39898 * 109.47048 * 2 1 4 4 C 1.50701 * 109.46685 * 119.99663 * 2 1 3 5 5 H 1.08004 * 120.00081 * 120.00151 * 4 2 1 6 6 C 1.37879 * 120.00365 * 299.99742 * 4 2 1 7 7 N 1.31509 * 119.99701 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47113 * 59.99972 * 8 6 4 10 10 H 1.48491 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47115 * 300.00461 * 8 6 4 12 12 C 1.52998 * 109.47156 * 239.99531 * 2 1 3 13 13 H 1.08999 * 110.83547 * 300.09968 * 12 2 1 14 14 C 1.54818 * 110.90531 * 176.45175 * 12 2 1 15 15 C 1.54096 * 104.30204 * 220.98837 * 14 12 2 16 16 O 1.43747 * 107.29834 * 357.90573 * 15 14 12 17 17 C 1.44380 * 106.97350 * 26.51249 * 16 15 14 18 18 H 1.08996 * 109.47156 * 186.05163 * 1 2 3 19 19 H 1.08998 * 109.46991 * 306.05481 * 1 2 3 20 20 H 1.09005 * 109.46392 * 66.05522 * 1 2 3 21 21 H 0.97001 * 120.00039 * 179.97438 * 7 6 4 22 22 H 1.09000 * 110.48405 * 102.24484 * 14 12 2 23 23 H 1.08995 * 110.48706 * 339.73127 * 14 12 2 24 24 H 1.08998 * 109.87789 * 117.32955 * 15 14 12 25 25 H 1.09007 * 109.88064 * 238.48029 * 15 14 12 26 26 H 1.09000 * 110.62134 * 78.43846 * 17 16 15 27 27 H 1.09000 * 110.61728 * 201.28514 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.8073 -1.1189 4.0079 10 1 1.8268 -0.4197 5.2205 11 1 1.8279 -2.5197 4.0083 12 6 2.0400 -0.7213 -1.2492 13 1 1.6876 -1.7525 -1.2724 14 6 3.5851 -0.6637 -1.3283 15 6 3.8804 -0.3980 -2.8172 16 8 2.6181 -0.3661 -3.5042 17 6 1.6227 0.0355 -2.5386 18 1 -0.3633 -1.0219 0.1083 19 1 -0.3633 0.6048 0.8308 20 1 -0.3632 0.4171 -0.9393 21 1 0.7081 1.1610 3.4844 22 1 4.0187 -1.6140 -1.0169 23 1 3.9685 0.1496 -0.7122 24 1 4.3876 0.5603 -2.9291 25 1 4.5017 -1.1978 -3.2203 26 1 1.6571 1.1129 -2.3772 27 1 0.6282 -0.2714 -2.8623 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272833.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -109.074530 kcal Electronic energy + Delta-G solvation = -12340.495708 eV Core-core repulsion = 10012.319086 eV Total energy + Delta-G solvation = -2328.176622 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.68830 -38.57215 -33.91239 -31.84862 -29.73552 -27.48471 -25.46660 -22.51635 -21.17374 -19.06859 -16.70174 -15.80884 -15.67689 -14.58430 -14.51147 -13.45499 -13.27897 -13.06350 -12.65813 -11.96778 -11.46704 -11.17686 -10.97785 -10.86799 -10.79802 -10.49251 -10.47022 -10.18455 -9.99610 -9.21791 -9.01735 -8.68416 -8.53749 -6.11089 -4.29138 3.25398 3.30357 3.32358 4.31487 4.48478 5.16969 5.30108 5.48473 5.56971 5.74525 5.94327 6.17334 6.26453 6.28007 6.43096 6.61879 6.71217 6.75670 6.81370 6.98072 7.37205 7.62167 7.76951 7.96459 8.12390 8.72955 9.44168 10.91697 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.058855 B = 0.013580 C = 0.012214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.630764 B = 2061.387512 C = 2291.932676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.249 3.751 3 F -0.230 7.230 4 C -0.553 4.553 5 H 0.064 0.936 6 C 0.077 3.923 7 N -0.871 5.871 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.129 4.129 13 H 0.083 0.917 14 C -0.140 4.140 15 C 0.047 3.953 16 O -0.391 6.391 17 C 0.047 3.953 18 H 0.045 0.955 19 H 0.090 0.910 20 H 0.019 0.981 21 H 0.264 0.736 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 -2.278 -5.308 6.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.231 3.769 3 F -0.211 7.211 4 C -0.591 4.591 5 H 0.082 0.918 6 C -0.128 4.128 7 N -0.506 5.506 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.148 4.148 13 H 0.101 0.899 14 C -0.178 4.178 15 C -0.030 4.030 16 O -0.310 6.310 17 C -0.029 4.029 18 H 0.065 0.935 19 H 0.108 0.892 20 H 0.038 0.962 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.810 -2.154 -5.391 6.081 hybrid contribution 0.378 -0.356 1.150 1.262 sum 2.189 -2.511 -4.241 5.393 Atomic orbital electron populations 1.22285 0.97247 1.01472 1.00570 1.18214 0.91197 0.75946 0.91560 1.92706 1.90423 1.40495 1.97487 1.21319 1.34136 1.13547 0.90087 0.91761 1.25025 0.94032 0.94465 0.99309 1.69931 1.34903 1.21901 1.23905 0.86574 0.79394 0.79703 0.81838 1.20031 1.21097 1.20036 1.23315 0.95066 1.00657 0.95791 0.89880 1.22804 0.96783 1.03076 0.95099 1.23162 0.86708 1.00282 0.92822 1.88746 1.17456 1.89789 1.35022 1.23712 0.91880 0.99212 0.88065 0.93539 0.89176 0.96225 0.92583 0.91288 0.89753 0.93094 0.90856 0.91886 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.53 37.16 0.32 -3.41 15 2 C 0.25 6.16 0.54 -91.77 -0.05 6.11 15 3 F -0.23 -6.25 14.81 2.25 0.03 -6.21 15 4 C -0.55 -14.81 7.83 -34.44 -0.27 -15.08 15 5 H 0.06 1.68 7.60 -52.48 -0.40 1.28 15 6 C 0.08 2.09 5.27 -17.82 -0.09 2.00 15 7 N -0.87 -24.63 11.06 55.43 0.61 -24.02 15 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 12 C -0.13 -2.70 2.49 -88.48 -0.22 -2.92 15 13 H 0.08 1.69 8.14 -51.93 -0.42 1.27 15 14 C -0.14 -2.70 5.87 -25.20 -0.15 -2.84 15 15 C 0.05 0.80 7.70 37.73 0.29 1.09 15 16 O -0.39 -7.42 11.52 -35.23 -0.41 -7.82 15 17 C 0.05 0.91 6.18 38.34 0.24 1.15 15 18 H 0.05 1.04 8.14 -51.93 -0.42 0.61 15 19 H 0.09 2.36 6.26 -51.93 -0.32 2.03 15 20 H 0.02 0.40 7.09 -51.93 -0.37 0.03 15 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 22 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.08 1.78 7.31 -51.93 -0.38 1.40 15 24 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 25 H 0.07 1.07 8.14 -51.92 -0.42 0.65 15 26 H 0.06 1.26 7.42 -51.93 -0.39 0.87 15 27 H 0.09 1.48 7.94 -51.93 -0.41 1.07 15 LS Contribution 225.29 15.07 3.40 3.40 Total: -1.00 -28.70 225.29 -4.84 -33.54 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.52 Total: -0.77 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 0.06 Total: -13.91 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.61 Total: -24.02 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.41 Total: -7.82 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.03 Total: -6.21 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.70 -4.84 -33.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272833.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.535 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds