Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39898 * 109.47048 * 2 1 4 4 C 1.50701 * 109.46685 * 119.99663 * 2 1 3 5 5 H 1.08004 * 120.00081 * 120.00151 * 4 2 1 6 6 C 1.37879 * 120.00365 * 299.99742 * 4 2 1 7 7 N 1.31509 * 119.99701 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47113 * 59.99972 * 8 6 4 10 10 H 1.48491 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47115 * 300.00461 * 8 6 4 12 12 C 1.52998 * 109.47156 * 239.99531 * 2 1 3 13 13 H 1.08999 * 110.83547 * 300.09968 * 12 2 1 14 14 C 1.54818 * 110.90531 * 176.45175 * 12 2 1 15 15 C 1.54096 * 104.30204 * 220.98837 * 14 12 2 16 16 O 1.43747 * 107.29834 * 357.90573 * 15 14 12 17 17 C 1.44380 * 106.97350 * 26.51249 * 16 15 14 18 18 H 1.08996 * 109.47156 * 186.05163 * 1 2 3 19 19 H 1.08998 * 109.46991 * 306.05481 * 1 2 3 20 20 H 1.09005 * 109.46392 * 66.05522 * 1 2 3 21 21 H 0.97001 * 120.00039 * 179.97438 * 7 6 4 22 22 H 1.09000 * 110.48405 * 102.24484 * 14 12 2 23 23 H 1.08995 * 110.48706 * 339.73127 * 14 12 2 24 24 H 1.08998 * 109.87789 * 117.32955 * 15 14 12 25 25 H 1.09007 * 109.88064 * 238.48029 * 15 14 12 26 26 H 1.09000 * 110.62134 * 78.43846 * 17 16 15 27 27 H 1.09000 * 110.61728 * 201.28514 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.8073 -1.1189 4.0079 10 1 1.8268 -0.4197 5.2205 11 1 1.8279 -2.5197 4.0083 12 6 2.0400 -0.7213 -1.2492 13 1 1.6876 -1.7525 -1.2724 14 6 3.5851 -0.6637 -1.3283 15 6 3.8804 -0.3980 -2.8172 16 8 2.6181 -0.3661 -3.5042 17 6 1.6227 0.0355 -2.5386 18 1 -0.3633 -1.0219 0.1083 19 1 -0.3633 0.6048 0.8308 20 1 -0.3632 0.4171 -0.9393 21 1 0.7081 1.1610 3.4844 22 1 4.0187 -1.6140 -1.0169 23 1 3.9685 0.1496 -0.7122 24 1 4.3876 0.5603 -2.9291 25 1 4.5017 -1.1978 -3.2203 26 1 1.6571 1.1129 -2.3772 27 1 0.6282 -0.2714 -2.8623 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272833.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -126.826015 kcal Electronic energy + Delta-G solvation = -12341.265470 eV Core-core repulsion = 10012.319086 eV Total energy + Delta-G solvation = -2328.946384 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.72497 -40.07556 -35.80510 -33.68915 -31.35316 -29.13951 -27.44643 -24.20521 -22.73166 -20.84288 -18.68349 -17.45920 -17.26577 -16.42682 -16.08999 -15.24359 -15.21661 -14.81945 -14.22498 -13.76754 -13.29312 -13.02794 -12.85498 -12.65352 -12.45166 -12.34660 -12.23213 -11.93976 -11.56852 -10.89146 -10.78866 -10.62208 -10.45352 -8.15310 -6.40297 1.41806 1.42990 1.50762 2.38181 3.03120 3.11000 3.76734 3.97954 4.06580 4.29805 4.42670 4.51826 4.70447 4.74776 4.85206 4.90871 4.99086 5.02462 5.18570 5.30751 5.57031 5.82877 5.91206 5.98384 6.16190 6.66370 7.36528 8.86364 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.058855 B = 0.013580 C = 0.012214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.630764 B = 2061.387512 C = 2291.932676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.234 3.766 3 F -0.248 7.248 4 C -0.568 4.568 5 H 0.066 0.934 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C -0.130 4.130 13 H 0.090 0.910 14 C -0.139 4.139 15 C 0.049 3.951 16 O -0.396 6.396 17 C 0.054 3.946 18 H 0.052 0.948 19 H 0.060 0.940 20 H 0.043 0.957 21 H 0.264 0.736 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 -3.379 -5.894 7.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.216 3.784 3 F -0.230 7.230 4 C -0.606 4.606 5 H 0.084 0.916 6 C -0.176 4.176 7 N -0.538 5.538 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.190 1.190 12 C -0.149 4.149 13 H 0.108 0.892 14 C -0.177 4.177 15 C -0.028 4.028 16 O -0.315 6.315 17 C -0.022 4.022 18 H 0.072 0.928 19 H 0.079 0.921 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.122 0.878 26 H 0.069 0.931 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.357 -3.263 -5.990 7.217 hybrid contribution 0.220 -0.003 1.314 1.332 sum 2.578 -3.266 -4.677 6.259 Atomic orbital electron populations 1.22171 0.96762 1.01452 1.00588 1.18469 0.91799 0.75229 0.92896 1.92662 1.90700 1.41938 1.97652 1.21693 1.33951 1.13706 0.91222 0.91563 1.25835 0.94251 0.95184 1.02328 1.70070 1.36072 1.23293 1.24412 0.85586 0.78793 0.78909 0.78210 1.19712 1.20956 1.18992 1.23222 0.96273 1.00574 0.94800 0.89199 1.22775 0.95630 1.02765 0.96557 1.23284 0.86376 1.02045 0.91046 1.88744 1.18015 1.89737 1.35027 1.23635 0.93001 0.98256 0.87336 0.92840 0.92115 0.93838 0.92706 0.90102 0.92217 0.92219 0.87757 0.93111 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.11 8.53 71.98 0.61 -6.49 15 2 C 0.23 11.50 0.54 -11.54 -0.01 11.49 15 3 F -0.25 -13.61 14.81 44.97 0.67 -12.94 15 4 C -0.57 -30.23 7.83 25.60 0.20 -30.03 15 5 H 0.07 3.40 7.60 -2.91 -0.02 3.38 15 6 C 0.03 1.41 5.27 84.66 0.45 1.86 15 7 N -0.90 -51.55 11.06 21.45 0.24 -51.31 15 8 Si 0.96 42.46 29.54 68.60 2.03 44.49 15 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 12 C -0.13 -5.23 2.49 -9.41 -0.02 -5.26 15 13 H 0.09 3.48 8.14 -2.39 -0.02 3.46 15 14 C -0.14 -5.15 5.87 31.59 0.19 -4.97 15 15 C 0.05 1.53 7.70 72.35 0.56 2.08 15 16 O -0.40 -13.94 11.52 -148.98 -1.72 -15.65 15 17 C 0.05 1.96 6.18 72.75 0.45 2.41 15 18 H 0.05 2.35 8.14 -2.39 -0.02 2.33 15 19 H 0.06 3.20 6.26 -2.39 -0.01 3.19 15 20 H 0.04 1.76 7.09 -2.38 -0.02 1.74 15 21 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 22 H 0.08 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.06 2.49 7.31 -2.39 -0.02 2.47 15 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.10 2.64 8.14 -2.38 -0.02 2.62 15 26 H 0.05 1.97 7.42 -2.39 -0.02 1.95 15 27 H 0.10 3.36 7.94 -2.39 -0.02 3.34 15 Total: -1.00 -59.83 225.29 4.78 -55.05 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.15 Total: 9.27 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 2.42 Total: -28.89 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.24 Total: -51.31 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -1.72 Total: -15.65 kcal Atomic # 9 Polarization: -13.61 SS G_CDS: 0.67 Total: -12.94 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -59.83 4.78 -55.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272833.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.775 kcal (2) G-P(sol) polarization free energy of solvation -59.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds