Wall clock time and date at job start Mon Mar 30 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39900 * 109.47321 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99924 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99764 * 2 1 3 13 13 H 1.08998 * 110.99043 * 295.79822 * 12 2 1 14 14 C 1.55304 * 111.12684 * 60.00353 * 12 2 1 15 15 C 1.54375 * 102.25260 * 152.05053 * 14 12 2 16 16 O 1.43238 * 107.59074 * 338.64148 * 15 14 12 17 17 C 1.43641 * 109.97328 * 358.29005 * 16 15 14 18 18 H 1.09001 * 109.47094 * 300.00284 * 1 2 3 19 19 H 1.09003 * 109.46851 * 60.00310 * 1 2 3 20 20 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 21 21 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 22 22 H 1.08997 * 110.84490 * 270.24154 * 14 12 2 23 23 H 1.08996 * 110.84853 * 33.85826 * 14 12 2 24 24 H 1.08998 * 109.83577 * 98.15899 * 15 14 12 25 25 H 1.09004 * 109.83524 * 219.03953 * 15 14 12 26 26 H 1.09001 * 110.31015 * 265.51376 * 17 16 15 27 27 H 1.08995 * 110.31361 * 143.34351 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1120 4.0080 9 1 3.1571 -2.2792 3.6039 10 1 3.1606 -0.1760 4.8105 11 1 1.1811 -1.5770 4.8222 12 6 2.0399 -0.7213 -1.2492 13 1 1.7525 -1.7726 -1.2377 14 6 1.5437 -0.0194 -2.5426 15 6 2.6571 -0.3694 -3.5531 16 8 3.8309 -0.7061 -2.8044 17 6 3.5741 -0.5625 -1.3985 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 0.7164 1.1669 3.4844 22 1 0.5860 -0.4292 -2.8633 23 1 1.4764 1.0588 -2.3975 24 1 2.3501 -1.2199 -4.1618 25 1 2.8590 0.4895 -4.1932 26 1 3.8875 0.4234 -1.0554 27 1 4.0914 -1.3411 -0.8379 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272834.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:31 Heat of formation + Delta-G solvation = -127.099583 kcal Electronic energy + Delta-G solvation = -12328.816647 eV Core-core repulsion = 9999.858400 eV Total energy + Delta-G solvation = -2328.958247 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.73388 -40.10224 -35.82328 -33.80145 -31.01139 -29.62650 -27.36221 -23.81434 -23.05338 -20.80565 -18.78234 -17.56890 -17.24983 -16.45657 -15.94258 -15.36133 -15.01328 -14.74500 -14.42150 -13.77318 -13.34431 -13.12331 -12.81971 -12.70867 -12.45216 -12.31120 -12.21670 -11.92848 -11.66512 -10.92751 -10.73276 -10.56706 -10.39292 -8.16458 -6.42192 1.40146 1.42671 1.53941 2.37828 2.99050 3.09706 3.64949 3.96656 4.08145 4.35169 4.42074 4.47198 4.73541 4.78272 4.84352 4.92808 5.00270 5.01117 5.11160 5.30345 5.56103 5.81335 5.98501 6.06481 6.15727 6.65387 7.35379 8.85165 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.058300 B = 0.013562 C = 0.012149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.162035 B = 2064.051230 C = 2304.141409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.234 3.766 3 F -0.249 7.249 4 C -0.571 4.571 5 H 0.066 0.934 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.961 3.039 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.275 1.275 12 C -0.130 4.130 13 H 0.093 0.907 14 C -0.148 4.148 15 C 0.050 3.950 16 O -0.408 6.408 17 C 0.068 3.932 18 H 0.061 0.939 19 H 0.042 0.958 20 H 0.054 0.946 21 H 0.264 0.736 22 H 0.099 0.901 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -3.234 -7.064 7.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.216 3.784 3 F -0.230 7.230 4 C -0.608 4.608 5 H 0.084 0.916 6 C -0.176 4.176 7 N -0.537 5.537 8 Si 0.786 3.214 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.201 1.201 12 C -0.149 4.149 13 H 0.111 0.889 14 C -0.185 4.185 15 C -0.026 4.026 16 O -0.328 6.328 17 C -0.008 4.008 18 H 0.080 0.920 19 H 0.061 0.939 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.118 0.882 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.232 -3.138 -7.035 7.707 hybrid contribution 0.028 0.044 1.175 1.176 sum 0.260 -3.094 -5.860 6.632 Atomic orbital electron populations 1.22140 0.96508 1.01009 1.01170 1.18437 0.92069 0.75177 0.92670 1.92663 1.90686 1.41986 1.97639 1.21790 1.34020 1.13670 0.91348 0.91573 1.25836 0.94214 0.95145 1.02360 1.70072 1.36116 1.23220 1.24339 0.85471 0.78352 0.78675 0.78936 1.18727 1.20875 1.20068 1.23309 0.95357 1.00979 0.95243 0.88862 1.23150 1.00135 1.01109 0.94138 1.23264 0.84186 1.01072 0.94039 1.88281 1.36650 1.89975 1.17898 1.23168 0.95690 1.00778 0.81161 0.91982 0.93905 0.92732 0.92662 0.88211 0.91724 0.89351 0.90508 0.93625 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.98 8.49 71.98 0.61 -6.36 15 2 C 0.23 11.51 0.60 -11.54 -0.01 11.50 15 3 F -0.25 -13.68 14.77 44.97 0.66 -13.01 15 4 C -0.57 -30.46 7.94 25.60 0.20 -30.26 15 5 H 0.07 3.43 7.74 -2.91 -0.02 3.40 15 6 C 0.03 1.44 5.27 84.66 0.45 1.88 15 7 N -0.90 -51.43 10.99 21.45 0.24 -51.19 15 8 Si 0.96 42.60 29.54 68.60 2.03 44.62 15 9 H -0.26 -11.23 7.11 99.48 0.71 -10.53 15 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 15 12 C -0.13 -5.22 2.43 -9.33 -0.02 -5.24 15 13 H 0.09 3.57 8.14 -2.39 -0.02 3.55 15 14 C -0.15 -4.87 5.32 31.85 0.17 -4.70 15 15 C 0.05 1.49 7.79 72.45 0.56 2.05 15 16 O -0.41 -15.08 11.36 -148.98 -1.69 -16.77 15 17 C 0.07 2.75 6.85 72.65 0.50 3.25 15 18 H 0.06 3.27 6.08 -2.39 -0.01 3.25 15 19 H 0.04 1.74 7.30 -2.39 -0.02 1.72 15 20 H 0.05 2.33 8.14 -2.39 -0.02 2.31 15 21 H 0.26 14.27 8.31 -92.70 -0.77 13.50 15 22 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.06 2.31 7.56 -2.39 -0.02 2.29 15 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.08 2.01 8.14 -2.38 -0.02 1.99 15 26 H 0.05 2.03 7.23 -2.39 -0.02 2.01 15 27 H 0.08 3.27 8.14 -2.39 -0.02 3.26 15 Total: -1.00 -60.34 225.74 4.84 -55.50 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.14 Total: 8.73 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 2.46 Total: -27.88 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.24 Total: -51.19 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -1.69 Total: -16.77 kcal Atomic # 9 Polarization: -13.68 SS G_CDS: 0.66 Total: -13.01 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -60.34 4.84 -55.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272834.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.596 kcal (2) G-P(sol) polarization free energy of solvation -60.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds