Wall clock time and date at job start Mon Mar 30 2020 02:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00099 * 2 1 4 4 H 1.48496 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46882 * 299.99413 * 3 2 1 6 6 H 1.48498 * 109.47204 * 59.99495 * 3 2 1 7 7 C 1.37875 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99889 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99967 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47078 * 299.99967 * 9 7 2 11 11 F 1.39893 * 109.46956 * 60.00246 * 9 7 2 12 12 C 1.53007 * 109.46911 * 180.02562 * 9 7 2 13 13 H 1.08997 * 109.52368 * 59.87307 * 12 9 7 14 14 C 1.53181 * 109.51787 * 299.68397 * 12 9 7 15 15 C 1.53186 * 109.02951 * 183.11859 * 14 12 9 16 16 C 1.53087 * 109.16665 * 56.98173 * 15 14 12 17 17 O 1.42905 * 109.41504 * 302.39123 * 16 15 14 18 18 C 1.42905 * 114.09831 * 61.15479 * 17 16 15 19 19 H 0.96999 * 119.99640 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.54268 * 302.97654 * 14 12 9 21 21 H 1.08993 * 109.54386 * 63.16556 * 14 12 9 22 22 H 1.09001 * 109.51857 * 176.88572 * 15 14 12 23 23 H 1.08996 * 109.52017 * 297.06828 * 15 14 12 24 24 H 1.08994 * 109.48330 * 182.40659 * 16 15 14 25 25 H 1.09001 * 109.48123 * 62.37055 * 16 15 14 26 26 H 1.08998 * 109.47767 * 58.82768 * 18 17 16 27 27 H 1.09004 * 109.47562 * 178.86126 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 9 0.4473 -2.5735 -1.1420 12 6 2.2454 -3.6621 0.0018 13 1 2.8733 -3.6034 0.8908 14 6 3.1224 -3.5870 -1.2518 15 6 4.0599 -4.7981 -1.2789 16 6 3.2256 -6.0807 -1.2294 17 8 2.4107 -6.0724 -0.0555 18 6 1.4811 -4.9885 0.0018 19 1 -0.4849 0.8401 -0.0004 20 1 2.4905 -3.5952 -2.1399 21 1 3.7104 -2.6695 -1.2311 22 1 4.6493 -4.7821 -2.1957 23 1 4.7254 -4.7629 -0.4164 24 1 3.8890 -6.9452 -1.2053 25 1 2.5896 -6.1349 -2.1130 26 1 0.8223 -5.0285 -0.8657 27 1 0.8879 -5.0663 0.9129 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297274.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:53 Heat of formation + Delta-G solvation = -139.899167 kcal Electronic energy + Delta-G solvation = -12134.376076 eV Core-core repulsion = 9804.862798 eV Total energy + Delta-G solvation = -2329.513278 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.75522 -40.09268 -35.59329 -34.34540 -32.62380 -28.91959 -26.14716 -25.15016 -22.75391 -20.74184 -18.86110 -17.28114 -16.91246 -16.67250 -16.27146 -15.80260 -15.50655 -15.02325 -14.43966 -13.95671 -13.56045 -13.43540 -12.95399 -12.80858 -12.43626 -12.19368 -11.99593 -11.84323 -11.33408 -11.01886 -10.96049 -10.62447 -10.21667 -8.27206 -6.50153 1.38838 1.39554 1.52831 2.34884 2.95922 3.05056 3.91339 3.94797 3.98838 4.11022 4.34315 4.48014 4.55953 4.73352 4.78414 4.87584 4.91702 5.05683 5.18673 5.33460 5.43756 5.64023 5.75099 5.97848 6.25087 6.61094 7.28384 8.81302 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.064322 B = 0.011779 C = 0.010662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.207073 B = 2376.476199 C = 2625.545341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.214 3.786 10 H 0.011 0.989 11 F -0.250 7.250 12 C -0.131 4.131 13 H 0.079 0.921 14 C -0.106 4.106 15 C -0.147 4.147 16 C 0.054 3.946 17 O -0.396 6.396 18 C 0.071 3.929 19 H 0.267 0.733 20 H 0.047 0.953 21 H 0.060 0.940 22 H 0.092 0.908 23 H 0.071 0.929 24 H 0.119 0.881 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 -7.663 -1.741 10.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.186 4.186 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.611 4.611 8 H 0.092 0.908 9 C 0.178 3.822 10 H 0.029 0.971 11 F -0.231 7.231 12 C -0.151 4.151 13 H 0.097 0.903 14 C -0.143 4.143 15 C -0.185 4.185 16 C -0.022 4.022 17 O -0.315 6.315 18 C -0.006 4.006 19 H 0.076 0.924 20 H 0.066 0.934 21 H 0.079 0.921 22 H 0.111 0.889 23 H 0.089 0.911 24 H 0.137 0.863 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.707 -7.709 -1.626 10.347 hybrid contribution -0.189 1.314 -0.187 1.341 sum 6.518 -6.396 -1.813 9.310 Atomic orbital electron populations 1.70142 1.07926 1.28175 1.49181 1.26054 0.95716 1.03735 0.93095 0.85321 0.79157 0.78204 0.77860 1.18259 1.20498 1.19978 1.21878 0.94125 0.91292 1.53784 0.90825 1.19031 0.87275 0.94428 0.81460 0.97100 1.92634 1.77123 1.97498 1.55870 1.22218 0.98018 0.94727 1.00094 0.90280 1.21449 0.97621 0.98807 0.96467 1.22196 0.98301 0.94399 1.03591 1.22806 0.93354 0.98663 0.87393 1.87840 1.52134 1.47828 1.43747 1.22538 0.90780 0.85321 1.01946 0.92420 0.93394 0.92098 0.88922 0.91060 0.86303 0.93131 0.93707 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 12.95 21.45 0.28 -55.04 15 2 C 0.02 0.85 5.42 84.65 0.46 1.31 15 3 Si 0.97 43.48 29.54 68.60 2.03 45.51 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 7 C -0.57 -31.83 8.17 25.60 0.21 -31.62 15 8 H 0.07 3.90 6.74 -2.91 -0.02 3.88 15 9 C 0.21 11.23 2.86 29.85 0.09 11.31 15 10 H 0.01 0.63 8.14 -2.39 -0.02 0.61 15 11 F -0.25 -14.17 15.50 44.97 0.70 -13.48 15 12 C -0.13 -5.48 2.26 -10.70 -0.02 -5.50 15 13 H 0.08 3.25 8.14 -2.39 -0.02 3.23 15 14 C -0.11 -4.00 4.91 30.72 0.15 -3.84 15 15 C -0.15 -4.13 6.14 30.69 0.19 -3.94 15 16 C 0.05 1.45 6.84 72.01 0.49 1.94 15 17 O -0.40 -13.27 10.77 -148.98 -1.60 -14.88 15 18 C 0.07 2.63 6.03 72.01 0.43 3.06 15 19 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 20 H 0.05 1.92 7.72 -2.39 -0.02 1.90 15 21 H 0.06 2.44 6.76 -2.39 -0.02 2.42 15 22 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.07 1.94 8.14 -2.39 -0.02 1.93 15 24 H 0.12 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 15 26 H 0.04 1.71 7.74 -2.39 -0.02 1.69 15 27 H 0.09 3.32 8.14 -2.38 -0.02 3.30 15 Total: -1.00 -63.75 226.97 4.53 -59.22 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.14 Total: 5.95 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 2.00 Total: -27.28 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.28 Total: -55.04 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.60 Total: -14.88 kcal Atomic # 9 Polarization: -14.17 SS G_CDS: 0.70 Total: -13.48 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -63.75 4.53 -59.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297274.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.682 kcal (2) G-P(sol) polarization free energy of solvation -63.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds