Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48497 * 109.47283 * 269.99865 * 3 2 1 5 5 H 1.48493 * 109.46990 * 30.00261 * 3 2 1 6 6 H 1.48506 * 109.46819 * 150.00223 * 3 2 1 7 7 C 1.37882 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00332 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99689 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47099 * 299.99921 * 9 7 2 11 11 F 1.39904 * 109.47206 * 60.00190 * 9 7 2 12 12 C 1.52997 * 109.47018 * 180.02562 * 9 7 2 13 13 H 1.08998 * 109.52642 * 59.87365 * 12 9 7 14 14 C 1.53178 * 109.52234 * 180.02562 * 12 9 7 15 15 C 1.53176 * 109.03609 * 176.95006 * 14 12 9 16 16 C 1.53095 * 109.16286 * 303.01594 * 15 14 12 17 17 O 1.42903 * 109.41530 * 57.61206 * 16 15 14 18 18 C 1.42906 * 114.09431 * 298.84283 * 17 16 15 19 19 H 0.96999 * 119.99840 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.54691 * 57.08027 * 14 12 9 21 21 H 1.08998 * 109.54245 * 296.81203 * 14 12 9 22 22 H 1.09001 * 109.52789 * 62.92535 * 15 14 12 23 23 H 1.09007 * 109.52321 * 183.11250 * 15 14 12 24 24 H 1.08997 * 109.47843 * 177.59528 * 16 15 14 25 25 H 1.08997 * 109.48336 * 297.62823 * 16 15 14 26 26 H 1.08998 * 109.48318 * 301.17291 * 18 17 16 27 27 H 1.09003 * 109.48246 * 181.13928 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 9 0.4462 -2.5730 -1.1426 12 6 2.2451 -3.6621 -0.0005 13 1 2.8738 -3.6040 0.8880 14 6 1.4804 -4.9893 -0.0012 15 6 2.4838 -6.1441 -0.0782 16 6 3.3518 -5.9731 -1.3277 17 8 4.0108 -4.7060 -1.2786 18 6 3.1223 -3.5870 -1.2530 19 1 -0.4850 0.8400 0.0004 20 1 0.8150 -5.0263 -0.8636 21 1 0.8966 -5.0742 0.9154 22 1 3.1170 -6.1363 0.8090 23 1 1.9462 -7.0907 -0.1349 24 1 4.0959 -6.7686 -1.3650 25 1 2.7229 -6.0215 -2.2166 26 1 2.4904 -3.6041 -2.1409 27 1 3.7012 -2.6635 -1.2365 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297275.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = -140.230330 kcal Electronic energy + Delta-G solvation = -12136.945689 eV Core-core repulsion = 9807.418050 eV Total energy + Delta-G solvation = -2329.527639 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.75661 -40.08405 -35.49654 -34.47484 -32.66590 -28.78760 -25.92261 -25.52297 -22.65212 -20.76857 -18.79959 -17.27050 -17.25029 -16.57200 -16.03532 -15.76090 -15.40993 -15.16554 -14.41051 -14.00681 -13.55300 -13.45621 -12.88436 -12.73762 -12.54229 -12.21732 -11.99194 -11.93330 -11.39798 -11.06996 -10.75330 -10.66278 -10.24465 -8.27442 -6.51347 1.40091 1.41500 1.52815 2.35527 2.98692 3.06267 3.90506 3.92776 3.95803 4.10439 4.35167 4.47370 4.59188 4.71482 4.84794 4.89551 4.98289 5.00302 5.11833 5.26156 5.38603 5.60814 5.73663 5.98003 6.30248 6.60283 7.27947 8.80687 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.063572 B = 0.011871 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.341863 B = 2358.128650 C = 2608.928808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.216 3.784 10 H 0.011 0.989 11 F -0.250 7.250 12 C -0.131 4.131 13 H 0.079 0.921 14 C -0.120 4.120 15 C -0.144 4.144 16 C 0.050 3.950 17 O -0.401 6.401 18 C 0.084 3.916 19 H 0.267 0.733 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -9.007 -0.463 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.618 4.618 8 H 0.093 0.907 9 C 0.180 3.820 10 H 0.029 0.971 11 F -0.231 7.231 12 C -0.150 4.150 13 H 0.097 0.903 14 C -0.158 4.158 15 C -0.181 4.181 16 C -0.026 4.026 17 O -0.321 6.321 18 C 0.008 3.992 19 H 0.076 0.924 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.115 0.885 24 H 0.136 0.864 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.216 -8.893 -0.484 10.321 hybrid contribution -0.460 1.063 0.013 1.158 sum 4.756 -7.830 -0.471 9.173 Atomic orbital electron populations 1.70131 1.07946 1.28291 1.48893 1.26048 0.95701 1.03735 0.92925 0.85379 0.78815 0.77851 0.78590 1.19824 1.20461 1.18255 1.21904 0.94197 0.91442 1.54259 0.90716 1.19020 0.87191 0.94239 0.81545 0.97091 1.92636 1.77130 1.97493 1.55870 1.22198 0.97661 0.95320 0.99851 0.90255 1.21651 0.98098 0.93988 1.02021 1.22147 0.97960 0.98630 0.99410 1.22829 0.97218 0.85576 0.96968 1.87857 1.34294 1.14968 1.94933 1.22350 0.92200 0.88788 0.95903 0.92371 0.92743 0.91580 0.90872 0.88459 0.86416 0.93269 0.94329 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.21 12.95 21.45 0.28 -54.93 15 2 C 0.02 0.98 5.42 84.66 0.46 1.44 15 3 Si 0.97 43.53 29.54 68.60 2.03 45.56 15 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 7 C -0.58 -32.29 8.16 25.60 0.21 -32.08 15 8 H 0.07 3.95 6.74 -2.91 -0.02 3.93 15 9 C 0.22 11.36 2.87 29.85 0.09 11.44 15 10 H 0.01 0.63 8.14 -2.39 -0.02 0.61 15 11 F -0.25 -14.20 15.51 44.97 0.70 -13.50 15 12 C -0.13 -5.49 2.26 -10.70 -0.02 -5.51 15 13 H 0.08 3.27 8.14 -2.39 -0.02 3.25 15 14 C -0.12 -4.15 5.22 30.71 0.16 -3.99 15 15 C -0.14 -3.78 6.14 30.69 0.19 -3.59 15 16 C 0.05 1.36 6.84 72.01 0.49 1.85 15 17 O -0.40 -14.28 10.77 -148.98 -1.60 -15.89 15 18 C 0.08 3.41 5.74 72.01 0.41 3.82 15 19 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 20 H 0.05 1.98 7.73 -2.39 -0.02 1.96 15 21 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.10 1.98 8.14 -2.38 -0.02 1.96 15 24 H 0.12 2.42 8.14 -2.39 -0.02 2.40 15 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 26 H 0.04 1.63 7.74 -2.39 -0.02 1.61 15 27 H 0.09 3.79 6.73 -2.39 -0.02 3.77 15 Total: -1.00 -63.81 226.96 4.52 -59.28 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.14 Total: 6.10 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 1.98 Total: -26.61 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.28 Total: -54.93 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -1.60 Total: -15.89 kcal Atomic # 9 Polarization: -14.20 SS G_CDS: 0.70 Total: -13.50 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -63.81 4.52 -59.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297275.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.948 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds