Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99424 * 2 1 4 4 H 1.48507 * 109.47602 * 270.00076 * 3 2 1 5 5 H 1.48501 * 109.47382 * 30.00471 * 3 2 1 6 6 H 1.48501 * 109.47248 * 150.00231 * 3 2 1 7 7 C 1.37874 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00188 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47392 * 299.99900 * 9 7 2 11 11 F 1.39903 * 109.47484 * 60.00046 * 9 7 2 12 12 C 1.53003 * 109.47256 * 180.02562 * 9 7 2 13 13 C 1.53174 * 109.61696 * 180.22042 * 12 9 7 14 14 C 1.53095 * 109.16381 * 176.89131 * 13 12 9 15 15 O 1.42910 * 109.41337 * 302.39093 * 14 13 12 16 16 C 1.42902 * 114.09650 * 61.15575 * 15 14 13 17 17 C 1.53093 * 109.41910 * 298.84413 * 16 15 14 18 18 H 0.96997 * 120.00257 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.54370 * 59.99693 * 12 9 7 20 20 H 1.09004 * 109.52433 * 296.79634 * 13 12 9 21 21 H 1.08999 * 109.52728 * 56.98569 * 13 12 9 22 22 H 1.08998 * 109.48473 * 182.41141 * 14 13 12 23 23 H 1.08997 * 109.48189 * 62.37446 * 14 13 12 24 24 H 1.08997 * 109.48292 * 178.85819 * 16 15 14 25 25 H 1.09005 * 109.47939 * 58.82140 * 16 15 14 26 26 H 1.09003 * 109.51855 * 297.70418 * 17 16 15 27 27 H 1.08993 * 109.52292 * 177.51569 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5571 0.8897 11 9 0.4464 -2.5731 -1.1425 12 6 2.2455 -3.6620 -0.0005 13 6 1.4830 -4.9905 -0.0061 14 6 2.4855 -6.1449 -0.0845 15 8 3.2911 -5.9958 -1.2554 16 6 4.0631 -4.7936 -1.2832 17 6 3.1241 -3.5849 -1.2529 18 1 -0.4850 0.8400 0.0004 19 1 2.8729 -3.6053 0.8890 20 1 0.8973 -5.0782 0.9090 21 1 0.8188 -5.0257 -0.8695 22 1 1.9470 -7.0914 -0.1319 23 1 3.1232 -6.1333 0.7994 24 1 4.6611 -4.7666 -2.1941 25 1 4.7215 -4.7642 -0.4149 26 1 2.4930 -3.5916 -2.1416 27 1 3.7120 -2.6674 -1.2296 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312594.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = -120.568560 kcal Electronic energy + Delta-G solvation = -12124.981895 eV Core-core repulsion = 9796.306854 eV Total energy + Delta-G solvation = -2328.675040 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.53990 -38.68807 -33.98116 -32.38446 -30.61759 -27.71689 -24.51639 -22.97611 -21.37687 -19.06943 -16.67083 -15.75469 -15.55488 -14.84879 -14.38954 -14.24375 -13.61007 -13.18921 -12.84965 -12.48915 -11.79770 -11.46342 -11.01772 -10.85936 -10.81376 -10.54195 -10.29913 -10.11770 -9.88224 -9.46915 -8.85707 -8.57003 -8.48819 -6.11923 -4.27367 3.25910 3.32125 3.34514 4.25889 4.34065 5.21105 5.30672 5.42382 5.49167 5.58912 5.67491 5.83522 5.98330 6.07095 6.34266 6.45840 6.54574 6.60144 6.83589 7.01896 7.12812 7.57164 7.74726 7.85831 8.08693 8.76485 9.46334 10.95483 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.063848 B = 0.011754 C = 0.010627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.436025 B = 2381.577846 C = 2634.079699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.561 4.561 8 H 0.066 0.934 9 C 0.223 3.777 10 H 0.033 0.967 11 F -0.235 7.235 12 C -0.108 4.108 13 C -0.154 4.154 14 C 0.064 3.936 15 O -0.391 6.391 16 C 0.060 3.940 17 C -0.139 4.139 18 H 0.264 0.736 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 -7.298 0.483 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.599 4.599 8 H 0.084 0.916 9 C 0.187 3.813 10 H 0.051 0.949 11 F -0.216 7.216 12 C -0.126 4.126 13 C -0.192 4.192 14 C -0.012 4.012 15 O -0.310 6.310 16 C -0.017 4.017 17 C -0.177 4.177 18 H 0.074 0.926 19 H 0.088 0.912 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.103 0.897 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.081 -7.320 0.313 8.916 hybrid contribution 0.311 1.218 0.226 1.277 sum 5.392 -6.102 0.538 8.161 Atomic orbital electron populations 1.70009 1.06157 1.27106 1.47823 1.25090 0.94842 0.99668 0.93625 0.86512 0.79815 0.82850 0.78329 1.20364 1.21026 1.19658 1.21474 0.93539 0.90438 1.54419 0.91580 1.18953 0.86939 0.92526 0.82883 0.94946 1.92676 1.76410 1.97328 1.55222 1.21781 0.98008 0.94936 0.97922 1.22261 0.98735 0.95415 1.02747 1.22535 0.92571 0.98456 0.87673 1.87843 1.59921 1.40951 1.42276 1.22665 0.93093 0.84899 1.01009 1.22089 0.98562 0.97728 0.99301 0.92599 0.91246 0.91496 0.90867 0.89687 0.93797 0.89631 0.93866 0.91106 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 12.95 55.43 0.72 -25.40 15 2 C 0.07 2.06 5.42 -17.82 -0.10 1.96 15 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.56 -15.47 8.17 -34.45 -0.28 -15.75 15 8 H 0.07 1.74 6.73 -52.49 -0.35 1.39 15 9 C 0.22 5.77 2.87 -27.89 -0.08 5.69 15 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 11 F -0.24 -6.64 15.50 2.25 0.03 -6.60 15 12 C -0.11 -2.22 2.15 -90.44 -0.19 -2.42 15 13 C -0.15 -2.77 5.34 -26.59 -0.14 -2.91 15 14 C 0.06 0.99 6.84 37.21 0.25 1.25 15 15 O -0.39 -6.73 10.77 -35.23 -0.38 -7.11 15 16 C 0.06 0.97 6.84 37.21 0.25 1.22 15 17 C -0.14 -2.71 5.02 -26.59 -0.13 -2.85 15 18 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 19 H 0.07 1.38 8.14 -51.93 -0.42 0.95 15 20 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 21 H 0.07 1.43 7.73 -51.93 -0.40 1.02 15 22 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 24 H 0.09 1.22 8.14 -51.93 -0.42 0.79 15 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 26 H 0.07 1.50 7.73 -51.93 -0.40 1.10 15 27 H 0.08 1.61 6.75 -51.93 -0.35 1.26 15 LS Contribution 226.96 15.07 3.42 3.42 Total: -1.00 -30.39 226.96 -5.25 -35.64 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -3.60 Total: -2.35 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.42 Total: -13.81 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.72 Total: -25.40 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.38 Total: -7.11 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.03 Total: -6.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.39 -5.25 -35.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312594.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.929 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds