Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99424 * 2 1 4 4 H 1.48507 * 109.47602 * 270.00076 * 3 2 1 5 5 H 1.48501 * 109.47382 * 30.00471 * 3 2 1 6 6 H 1.48501 * 109.47248 * 150.00231 * 3 2 1 7 7 C 1.37874 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00188 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47392 * 299.99900 * 9 7 2 11 11 F 1.39903 * 109.47484 * 60.00046 * 9 7 2 12 12 C 1.53003 * 109.47256 * 180.02562 * 9 7 2 13 13 C 1.53174 * 109.61696 * 180.22042 * 12 9 7 14 14 C 1.53095 * 109.16381 * 176.89131 * 13 12 9 15 15 O 1.42910 * 109.41337 * 302.39093 * 14 13 12 16 16 C 1.42902 * 114.09650 * 61.15575 * 15 14 13 17 17 C 1.53093 * 109.41910 * 298.84413 * 16 15 14 18 18 H 0.96997 * 120.00257 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.54370 * 59.99693 * 12 9 7 20 20 H 1.09004 * 109.52433 * 296.79634 * 13 12 9 21 21 H 1.08999 * 109.52728 * 56.98569 * 13 12 9 22 22 H 1.08998 * 109.48473 * 182.41141 * 14 13 12 23 23 H 1.08997 * 109.48189 * 62.37446 * 14 13 12 24 24 H 1.08997 * 109.48292 * 178.85819 * 16 15 14 25 25 H 1.09005 * 109.47939 * 58.82140 * 16 15 14 26 26 H 1.09003 * 109.51855 * 297.70418 * 17 16 15 27 27 H 1.08993 * 109.52292 * 177.51569 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6249 -2.5571 0.8897 11 9 0.4464 -2.5731 -1.1425 12 6 2.2455 -3.6620 -0.0005 13 6 1.4830 -4.9905 -0.0061 14 6 2.4855 -6.1449 -0.0845 15 8 3.2911 -5.9958 -1.2554 16 6 4.0631 -4.7936 -1.2832 17 6 3.1241 -3.5849 -1.2529 18 1 -0.4850 0.8400 0.0004 19 1 2.8729 -3.6053 0.8890 20 1 0.8973 -5.0782 0.9090 21 1 0.8188 -5.0257 -0.8695 22 1 1.9470 -7.0914 -0.1319 23 1 3.1232 -6.1333 0.7994 24 1 4.6611 -4.7666 -2.1941 25 1 4.7215 -4.7642 -0.4149 26 1 2.4930 -3.5916 -2.1416 27 1 3.7120 -2.6674 -1.2296 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261312594.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = -140.158223 kcal Electronic energy + Delta-G solvation = -12125.831366 eV Core-core repulsion = 9796.306854 eV Total energy + Delta-G solvation = -2329.524512 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.72053 -40.06267 -35.71194 -34.36407 -31.97931 -29.62883 -26.30633 -24.38887 -23.09575 -20.67685 -18.78888 -17.25395 -16.92251 -16.72551 -16.24740 -15.62902 -15.49528 -15.11714 -14.44155 -14.19518 -13.54765 -13.22041 -12.88309 -12.64032 -12.43152 -12.15153 -12.12527 -11.68052 -11.57797 -11.00537 -10.79458 -10.64014 -10.22517 -8.26409 -6.49779 1.38925 1.40746 1.51649 2.35189 3.02931 3.05708 3.90953 3.92340 4.00862 4.16538 4.38224 4.50098 4.61790 4.77491 4.81921 4.85668 4.90049 5.05094 5.22691 5.32870 5.40326 5.64505 5.78598 6.00743 6.31217 6.61576 7.28823 8.81940 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.063848 B = 0.011754 C = 0.010627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.436025 B = 2381.577846 C = 2634.079699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.574 4.574 8 H 0.077 0.923 9 C 0.211 3.789 10 H 0.006 0.994 11 F -0.253 7.253 12 C -0.102 4.102 13 C -0.151 4.151 14 C 0.067 3.933 15 O -0.403 6.403 16 C 0.066 3.934 17 C -0.136 4.136 18 H 0.266 0.734 19 H 0.082 0.918 20 H 0.076 0.924 21 H 0.050 0.950 22 H 0.111 0.889 23 H 0.066 0.934 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 -7.791 0.835 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.188 4.188 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.612 4.612 8 H 0.095 0.905 9 C 0.176 3.824 10 H 0.024 0.976 11 F -0.234 7.234 12 C -0.121 4.121 13 C -0.189 4.189 14 C -0.009 4.009 15 O -0.322 6.322 16 C -0.010 4.010 17 C -0.174 4.174 18 H 0.075 0.925 19 H 0.100 0.900 20 H 0.095 0.905 21 H 0.069 0.931 22 H 0.129 0.871 23 H 0.084 0.916 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.973 -7.830 0.667 10.506 hybrid contribution -0.327 1.354 0.129 1.399 sum 6.646 -6.476 0.797 9.313 Atomic orbital electron populations 1.70149 1.08033 1.28179 1.49252 1.26092 0.95714 1.03862 0.93138 0.85362 0.78856 0.77805 0.78481 1.20009 1.20613 1.17980 1.21903 0.94231 0.91340 1.53707 0.90532 1.19127 0.87352 0.94761 0.81203 0.97577 1.92629 1.77223 1.97522 1.56070 1.21673 0.97193 0.94141 0.99125 1.22238 0.99118 0.95276 1.02276 1.22661 0.92144 0.98066 0.88028 1.87841 1.60146 1.40950 1.43262 1.22688 0.92308 0.82814 1.03184 1.22036 0.98561 0.99436 0.97375 0.92502 0.90012 0.90537 0.93104 0.87094 0.91603 0.87494 0.91716 0.93733 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.97 12.95 21.45 0.28 -55.69 15 2 C 0.01 0.73 5.42 84.65 0.46 1.19 15 3 Si 0.97 43.47 29.54 68.60 2.03 45.49 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 15 7 C -0.57 -31.84 8.17 25.60 0.21 -31.63 15 8 H 0.08 3.98 6.73 -2.91 -0.02 3.96 15 9 C 0.21 11.18 2.87 29.85 0.09 11.26 15 10 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 11 F -0.25 -14.79 15.50 44.97 0.70 -14.09 15 12 C -0.10 -4.18 2.15 -10.67 -0.02 -4.20 15 13 C -0.15 -5.29 5.34 30.68 0.16 -5.13 15 14 C 0.07 1.86 6.84 72.01 0.49 2.36 15 15 O -0.40 -12.68 10.77 -148.98 -1.60 -14.28 15 16 C 0.07 1.96 6.84 72.01 0.49 2.45 15 17 C -0.14 -5.19 5.02 30.69 0.15 -5.03 15 18 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 19 H 0.08 3.11 8.14 -2.39 -0.02 3.09 15 20 H 0.08 2.48 8.14 -2.39 -0.02 2.47 15 21 H 0.05 1.98 7.73 -2.39 -0.02 1.97 15 22 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.11 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.06 1.66 8.14 -2.38 -0.02 1.64 15 26 H 0.04 1.90 7.73 -2.39 -0.02 1.88 15 27 H 0.07 2.82 6.75 -2.39 -0.02 2.81 15 Total: -1.00 -65.50 226.96 4.57 -60.93 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.14 Total: 6.38 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 2.03 Total: -28.74 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.28 Total: -55.69 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -1.60 Total: -14.28 kcal Atomic # 9 Polarization: -14.79 SS G_CDS: 0.70 Total: -14.09 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.50 4.57 -60.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312594.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.228 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds