Wall clock time and date at job start Mon Mar 30 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47405 * 270.00117 * 3 2 1 5 5 H 1.48503 * 109.47143 * 30.00294 * 3 2 1 6 6 H 1.48502 * 109.47300 * 149.99664 * 3 2 1 7 7 C 1.37880 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00000 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.46864 * 59.99824 * 9 7 2 11 11 F 1.39903 * 109.46968 * 299.99885 * 9 7 2 12 12 C 1.52997 * 109.46896 * 179.97438 * 9 7 2 13 13 C 1.53175 * 109.54337 * 65.00095 * 12 9 7 14 14 C 1.53092 * 109.16344 * 176.84735 * 13 12 9 15 15 O 1.42905 * 109.41215 * 302.38824 * 14 13 12 16 16 C 1.42905 * 114.09831 * 61.16158 * 15 14 13 17 17 C 1.53098 * 109.41155 * 298.83847 * 16 15 14 18 18 H 0.97003 * 120.00511 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.54194 * 304.82299 * 12 9 7 20 20 H 1.09004 * 109.52714 * 56.93754 * 13 12 9 21 21 H 1.09001 * 109.57654 * 296.78485 * 13 12 9 22 22 H 1.08997 * 109.48111 * 182.40965 * 14 13 12 23 23 H 1.09000 * 109.48212 * 62.37239 * 14 13 12 24 24 H 1.09000 * 109.47932 * 58.81878 * 16 15 14 25 25 H 1.08993 * 109.48024 * 178.86013 * 16 15 14 26 26 H 1.08996 * 109.52270 * 297.70307 * 17 16 15 27 27 H 1.08995 * 109.57012 * 177.54155 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6248 -2.5571 -0.8897 11 9 0.4464 -2.5730 1.1426 12 6 2.2454 -3.6620 0.0005 13 6 3.0420 -3.6550 1.3088 14 6 3.9778 -4.8664 1.3339 15 8 3.2095 -6.0630 1.1922 16 6 2.4805 -6.1466 -0.0341 17 6 1.4846 -4.9866 -0.1141 18 1 -0.4851 0.8400 0.0004 19 1 2.9282 -3.5579 -0.8427 20 1 2.3554 -3.7075 2.1538 21 1 3.6298 -2.7393 1.3736 22 1 4.5163 -4.8902 2.2812 23 1 4.6903 -4.7924 0.5123 24 1 3.1735 -6.0894 -0.8735 25 1 1.9405 -7.0926 -0.0721 26 1 0.7666 -5.0661 0.7020 27 1 0.9579 -5.0227 -1.0676 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261312595.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:46 Heat of formation + Delta-G solvation = -140.507643 kcal Electronic energy + Delta-G solvation = -12119.167090 eV Core-core repulsion = 9789.627426 eV Total energy + Delta-G solvation = -2329.539664 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.72294 -40.06336 -35.70240 -34.37277 -31.97733 -29.64684 -26.29371 -24.40086 -23.08703 -20.68701 -18.79627 -17.24477 -16.93709 -16.72044 -16.22892 -15.62844 -15.52999 -15.10992 -14.43836 -14.20200 -13.54678 -13.19944 -12.88347 -12.64921 -12.45781 -12.15419 -12.12769 -11.66685 -11.59638 -11.01562 -10.81269 -10.63226 -10.22886 -8.26610 -6.50147 1.38676 1.40734 1.51751 2.35065 3.02604 3.05457 3.90602 3.92221 4.00492 4.16067 4.37974 4.49933 4.61391 4.76823 4.82323 4.84799 4.89727 5.05398 5.21669 5.32893 5.40855 5.63514 5.77708 6.00648 6.30887 6.61144 7.28516 8.81645 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.064354 B = 0.011631 C = 0.010613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.989884 B = 2406.728528 C = 2637.557657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.575 4.575 8 H 0.075 0.925 9 C 0.212 3.788 10 H 0.007 0.993 11 F -0.253 7.253 12 C -0.102 4.102 13 C -0.137 4.137 14 C 0.067 3.933 15 O -0.402 6.402 16 C 0.067 3.933 17 C -0.151 4.151 18 H 0.266 0.734 19 H 0.082 0.918 20 H 0.045 0.955 21 H 0.070 0.930 22 H 0.107 0.893 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.050 0.950 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.106 -7.809 -0.838 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.188 4.188 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.613 4.613 8 H 0.093 0.907 9 C 0.176 3.824 10 H 0.024 0.976 11 F -0.234 7.234 12 C -0.121 4.121 13 C -0.175 4.175 14 C -0.009 4.009 15 O -0.322 6.322 16 C -0.009 4.009 17 C -0.189 4.189 18 H 0.075 0.925 19 H 0.100 0.900 20 H 0.064 0.936 21 H 0.088 0.912 22 H 0.125 0.875 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.129 0.871 26 H 0.069 0.931 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.921 -7.857 -0.671 10.492 hybrid contribution -0.304 1.368 -0.138 1.409 sum 6.617 -6.489 -0.809 9.303 Atomic orbital electron populations 1.70146 1.08032 1.28196 1.49202 1.26092 0.95715 1.03865 0.93111 0.85356 0.78623 0.77731 0.78754 1.19166 1.20974 1.18443 1.21895 0.94176 0.91396 1.53796 0.90674 1.19125 0.87353 0.94725 0.81215 0.97557 1.92629 1.77229 1.97524 1.56045 1.21676 0.97459 0.94167 0.98820 1.22023 0.98936 0.99389 0.97109 1.22678 0.92289 0.82962 1.03016 1.87841 1.63669 1.40292 1.40366 1.22662 0.93378 0.98299 0.86571 1.22250 0.99113 0.95271 1.02274 0.92485 0.90001 0.93611 0.91170 0.87481 0.91726 0.91610 0.87060 0.93118 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.96 12.95 21.45 0.28 -55.68 15 2 C 0.01 0.75 5.42 84.66 0.46 1.21 15 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 15 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 6 H -0.26 -11.07 7.11 99.48 0.71 -10.37 15 7 C -0.58 -31.96 8.20 25.60 0.21 -31.75 15 8 H 0.08 3.92 7.06 -2.91 -0.02 3.90 15 9 C 0.21 11.20 2.82 29.85 0.08 11.28 15 10 H 0.01 0.37 8.14 -2.39 -0.02 0.36 15 11 F -0.25 -14.78 15.49 44.97 0.70 -14.08 15 12 C -0.10 -4.18 2.09 -10.68 -0.02 -4.20 15 13 C -0.14 -5.21 5.05 30.68 0.15 -5.06 15 14 C 0.07 1.97 6.84 72.01 0.49 2.46 15 15 O -0.40 -12.64 10.77 -148.98 -1.60 -14.24 15 16 C 0.07 1.85 6.84 72.01 0.49 2.35 15 17 C -0.15 -5.27 5.36 30.69 0.16 -5.11 15 18 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 19 H 0.08 3.13 8.14 -2.39 -0.02 3.11 15 20 H 0.05 1.95 7.60 -2.39 -0.02 1.93 15 21 H 0.07 2.76 7.06 -2.39 -0.02 2.74 15 22 H 0.11 2.70 8.14 -2.39 -0.02 2.68 15 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.11 2.51 8.14 -2.39 -0.02 2.50 15 26 H 0.05 1.96 7.86 -2.39 -0.02 1.95 15 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -65.52 227.58 4.57 -60.95 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.14 Total: 6.36 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 2.04 Total: -28.82 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.60 Total: -14.24 kcal Atomic # 9 Polarization: -14.78 SS G_CDS: 0.70 Total: -14.08 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.52 4.57 -60.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312595.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.558 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds