Wall clock time and date at job start Mon Mar 30 2020 02:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 120.00325 * 2 1 4 4 H 1.48504 * 109.46905 * 240.00568 * 3 2 1 5 5 H 1.48503 * 109.46759 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47266 * 120.00281 * 3 2 1 7 7 C 1.39925 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00373 * 162.18166 * 7 2 1 9 9 C 1.41416 * 119.99908 * 341.90859 * 7 2 1 10 10 C 1.40771 * 120.14581 * 335.37393 * 9 7 2 11 11 C 1.37578 * 119.58502 * 179.74055 * 10 9 7 12 12 C 1.38638 * 120.47965 * 0.53559 * 11 10 9 13 13 C 1.39055 * 120.86272 * 359.74000 * 12 11 10 14 14 C 1.39078 * 119.29434 * 359.97307 * 13 12 11 15 15 N 1.39634 * 111.59030 * 179.97438 * 13 12 11 16 16 C 1.46498 * 110.11503 * 359.97438 * 15 13 12 17 17 C 1.51307 * 130.70931 * 179.70734 * 12 11 10 18 18 H 0.97002 * 119.99838 * 359.97438 * 1 2 3 19 19 H 1.08004 * 120.20924 * 359.97438 * 10 9 7 20 20 H 1.08007 * 119.76192 * 180.29445 * 11 10 9 21 21 H 1.07992 * 119.96829 * 179.97438 * 14 13 12 22 22 H 0.97000 * 124.94251 * 179.97438 * 15 13 12 23 23 H 1.09004 * 110.28050 * 118.94778 * 16 15 13 24 24 H 1.08996 * 110.28690 * 240.95264 * 16 15 13 25 25 H 1.09005 * 110.41147 * 61.24910 * 17 12 11 26 26 H 1.09002 * 110.51502 * 298.85514 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2774 2.7465 0.0006 6 1 3.0962 1.6963 1.2124 7 6 2.0079 -1.2118 -0.0005 8 1 3.0490 -1.2341 -0.2867 9 6 1.3533 -2.4064 0.3792 10 6 0.2277 -2.3581 1.2234 11 6 -0.4035 -3.5269 1.5813 12 6 0.0677 -4.7486 1.1257 13 6 1.1812 -4.8192 0.2959 14 6 1.8260 -3.6453 -0.0790 15 7 1.4858 -6.1388 -0.0442 16 6 0.5301 -7.0544 0.5839 17 6 -0.4335 -6.1545 1.3742 18 1 -0.4850 0.8401 0.0004 19 1 -0.1402 -1.4092 1.5847 20 1 -1.2702 -3.4929 2.2249 21 1 2.6921 -3.6875 -0.7228 22 1 2.2229 -6.4098 -0.6135 23 1 -0.0144 -7.6130 -0.1776 24 1 1.0479 -7.7387 1.2557 25 1 -1.4515 -6.2667 1.0010 26 1 -0.3906 -6.3931 2.4369 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261313960.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:33 Heat of formation + Delta-G solvation = 18.755174 kcal Electronic energy + Delta-G solvation = -11026.682548 eV Core-core repulsion = 9069.392352 eV Total energy + Delta-G solvation = -1957.290196 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.74887 -35.47744 -32.90391 -30.71614 -28.50057 -27.56693 -24.79820 -21.40557 -20.65446 -19.87137 -17.26447 -15.66025 -15.15924 -14.76179 -14.24928 -13.67372 -12.65368 -12.41167 -12.08152 -11.56093 -11.39557 -11.30637 -11.05756 -10.98256 -10.46533 -10.37546 -9.91534 -9.25031 -9.16418 -8.63969 -7.28673 -6.69155 -6.13421 -4.27567 2.87058 3.10716 3.13722 3.24303 3.35608 3.98474 4.39516 4.69020 5.50898 5.56783 5.74263 5.92135 6.08862 6.46091 6.51945 6.59375 7.05540 7.12269 7.15845 7.24552 7.41570 7.78697 7.95724 8.13618 8.22131 8.45797 8.75607 8.82579 9.01465 9.13972 10.26845 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.083113 B = 0.010142 C = 0.009285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.808470 B = 2760.063609 C = 3014.940074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.143 3.857 10 C -0.194 4.194 11 C -0.057 4.057 12 C -0.288 4.288 13 C 0.206 3.794 14 C -0.279 4.279 15 N -0.765 5.765 16 C 0.128 3.872 17 C -0.063 4.063 18 H 0.280 0.720 19 H 0.118 0.882 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.398 0.602 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -5.153 1.197 5.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.140 3.860 10 C -0.215 4.215 11 C -0.076 4.076 12 C -0.293 4.293 13 C 0.107 3.893 14 C -0.303 4.303 15 N -0.401 5.401 16 C 0.002 3.998 17 C -0.100 4.100 18 H 0.091 0.909 19 H 0.136 0.864 20 H 0.103 0.897 21 H 0.104 0.896 22 H 0.233 0.767 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.087 -5.107 1.220 5.251 hybrid contribution 0.636 0.595 -0.354 0.941 sum 0.724 -4.512 0.866 4.651 Atomic orbital electron populations 1.69852 1.07557 1.29128 1.35231 1.25886 0.94682 1.01160 0.92233 0.86398 0.80161 0.80373 0.79917 1.19092 1.20395 1.18856 1.19510 0.98079 0.91252 1.40603 0.90628 1.17227 0.90373 0.91089 0.87339 1.21105 1.00585 0.96331 1.03446 1.19911 0.97766 0.91430 0.98517 1.19204 1.03609 0.93075 1.13394 1.18071 0.93714 0.84133 0.93396 1.20197 1.06707 0.90642 1.12741 1.44549 1.34225 1.03898 1.57379 1.21499 0.90707 0.92397 0.95156 1.20647 0.97518 0.93309 0.98523 0.90946 0.86422 0.89674 0.89557 0.76684 0.93539 0.93504 0.92426 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.97 10.98 55.55 0.61 -20.36 15 2 C 0.08 2.01 5.13 -17.35 -0.09 1.92 15 3 Si 0.91 18.99 29.59 -169.99 -5.03 13.96 15 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 7 C -0.46 -12.72 9.05 -37.74 -0.34 -13.07 15 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 15 9 C 0.14 3.97 5.56 -106.95 -0.59 3.37 15 10 C -0.19 -5.25 8.70 -38.87 -0.34 -5.59 15 11 C -0.06 -1.41 10.01 -39.67 -0.40 -1.81 15 12 C -0.29 -6.75 6.25 -103.87 -0.65 -7.40 15 13 C 0.21 4.92 7.01 -83.69 -0.59 4.33 15 14 C -0.28 -7.26 9.81 -38.49 -0.38 -7.64 15 15 N -0.76 -14.79 6.53 -58.18 -0.38 -15.17 15 16 C 0.13 2.12 7.95 -3.67 -0.03 2.09 15 17 C -0.06 -1.16 6.94 -27.21 -0.19 -1.35 15 18 H 0.28 6.72 8.30 -40.82 -0.34 6.39 15 19 H 0.12 3.24 6.18 -52.48 -0.32 2.92 15 20 H 0.09 1.87 8.06 -52.48 -0.42 1.45 15 21 H 0.09 2.14 8.06 -52.49 -0.42 1.72 15 22 H 0.40 6.66 8.96 -40.82 -0.37 6.30 15 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 LS Contribution 224.86 15.07 3.39 3.39 Total: -1.00 -28.99 224.86 -7.78 -36.77 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.78 Total: 6.55 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -3.59 Total: -25.13 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.23 Total: -35.54 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -28.99 -7.78 -36.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261313960.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.523 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds