Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47451 * 2 1 4 4 C 1.42898 * 114.00086 * 184.61586 * 3 2 1 5 5 C 1.50705 * 112.49692 * 300.67024 * 4 3 2 6 6 H 1.07998 * 119.99765 * 118.90232 * 5 4 3 7 7 C 1.37870 * 119.99734 * 298.90122 * 5 4 3 8 8 N 1.31521 * 120.00385 * 2.69338 * 7 5 4 9 9 Si 1.86804 * 119.99816 * 182.68854 * 7 5 4 10 10 H 1.48506 * 109.47065 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47101 * 300.00427 * 9 7 5 12 12 H 1.48500 * 109.46820 * 60.00233 * 9 7 5 13 13 C 1.53047 * 113.15177 * 70.45645 * 4 3 2 14 14 S 1.81491 * 89.86402 * 82.41540 * 13 4 3 15 15 C 1.53045 * 113.15379 * 170.88172 * 4 3 2 16 16 H 1.09004 * 109.46948 * 299.99763 * 1 2 3 17 17 H 1.08999 * 109.47182 * 59.99649 * 1 2 3 18 18 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 19 19 H 1.09007 * 109.46923 * 239.99472 * 2 1 3 20 20 H 1.08999 * 109.47182 * 120.00351 * 2 1 3 21 21 H 0.96998 * 119.99677 * 355.05759 * 8 7 5 22 22 H 1.09001 * 113.14445 * 197.65994 * 13 4 3 23 23 H 1.08998 * 113.14309 * 327.13679 * 13 4 3 24 24 H 1.09006 * 113.14692 * 32.86201 * 15 4 3 25 25 H 1.08997 * 113.15141 * 162.29564 * 15 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4269 1.4614 -0.1051 5 6 4.1462 0.7676 1.0230 6 1 4.8240 -0.0463 0.8117 7 6 3.9389 1.1719 2.3247 8 7 3.0740 2.1274 2.5868 9 14 4.8867 0.3626 3.7162 10 1 4.4842 0.9721 5.0093 11 1 4.5859 -1.0914 3.7399 12 1 6.3429 0.5635 3.5057 13 6 3.9610 1.0760 -1.4865 14 16 3.5590 2.7359 -2.1003 15 6 3.9003 2.8999 -0.3261 16 1 -0.3633 0.5138 0.8900 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3634 -1.0277 0.0005 19 1 1.8933 -0.5140 -0.8900 20 1 1.8933 -0.5139 0.8899 21 1 2.6349 2.5967 1.8603 22 1 5.0306 0.8657 -1.4890 23 1 3.3796 0.2887 -1.9663 24 1 3.2680 3.6394 0.1654 25 1 4.9579 3.0419 -0.1038 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261324252.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = -49.538291 kcal Electronic energy + Delta-G solvation = -10347.672325 eV Core-core repulsion = 8452.457470 eV Total energy + Delta-G solvation = -1895.214855 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.73255 -35.54217 -33.83365 -31.37715 -27.48183 -26.83913 -23.51847 -22.00117 -19.44297 -17.26873 -17.07686 -16.34354 -15.62944 -15.56494 -14.90538 -14.50658 -14.05195 -13.65636 -13.02181 -12.78872 -12.68648 -12.47079 -12.19542 -11.93451 -11.86166 -11.44679 -10.78440 -10.57134 -9.86475 -8.77405 -8.52799 -6.41924 0.85752 1.07333 1.60044 1.65094 1.84401 2.59161 2.92212 3.23437 3.85888 4.15377 4.28618 4.38783 4.44634 4.50464 4.58882 4.66496 4.86027 5.13609 5.18121 5.30728 5.73984 6.12183 6.56532 6.78292 7.47774 8.81532 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.036574 B = 0.017990 C = 0.013963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.394088 B = 1556.079464 C = 2004.823320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 O -0.388 6.388 4 C 0.215 3.785 5 C -0.628 4.628 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.913 5.913 9 Si 1.108 2.892 10 H -0.289 1.289 11 H -0.272 1.272 12 H -0.268 1.268 13 C -0.074 4.074 14 S -0.357 6.357 15 C -0.039 4.039 16 H 0.046 0.954 17 H 0.059 0.941 18 H 0.092 0.908 19 H 0.040 0.960 20 H 0.032 0.968 21 H 0.271 0.729 22 H 0.111 0.889 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 -4.365 -3.419 5.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.005 4.005 3 O -0.307 6.307 4 C 0.175 3.825 5 C -0.668 4.668 6 H 0.079 0.921 7 C -0.207 4.207 8 N -0.548 5.548 9 Si 0.931 3.069 10 H -0.215 1.215 11 H -0.198 1.198 12 H -0.193 1.193 13 C -0.222 4.222 14 S -0.131 6.131 15 C -0.188 4.188 16 H 0.065 0.935 17 H 0.078 0.922 18 H 0.111 0.889 19 H 0.058 0.942 20 H 0.050 0.950 21 H 0.082 0.918 22 H 0.129 0.871 23 H 0.108 0.892 24 H 0.086 0.914 25 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.000 -3.456 -3.023 4.592 hybrid contribution 0.233 -0.407 -0.859 0.979 sum 0.233 -3.863 -3.882 5.482 Atomic orbital electron populations 1.21706 0.92952 1.02964 1.01917 1.22159 0.95196 0.84186 0.99003 1.87748 1.21823 1.27030 1.94144 1.19687 0.80587 0.90632 0.91615 1.22257 1.29803 1.21608 0.93090 0.92058 1.27039 0.95640 0.95922 1.02068 1.70778 1.24415 1.22525 1.37058 0.83043 0.75428 0.75521 0.72947 1.21475 1.19777 1.19305 1.25031 1.04878 0.94221 0.98119 1.88252 1.91646 1.15211 1.17969 1.24581 1.03694 1.01808 0.88689 0.93518 0.92166 0.88930 0.94165 0.95012 0.91777 0.87081 0.89225 0.91392 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 10.28 71.98 0.74 -3.89 15 2 C 0.07 2.95 6.21 71.98 0.45 3.40 15 3 O -0.39 -18.89 8.84 -148.98 -1.32 -20.21 15 4 C 0.22 10.19 0.26 -11.51 0.00 10.19 15 5 C -0.63 -31.84 7.33 25.60 0.19 -31.65 15 6 H 0.06 3.02 7.81 -2.91 -0.02 3.00 15 7 C 0.00 -0.13 5.38 84.65 0.46 0.32 15 8 N -0.91 -52.26 13.49 21.45 0.29 -51.97 15 9 Si 1.11 46.35 29.90 68.60 2.05 48.40 15 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 15 11 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 12 H -0.27 -10.37 7.11 99.48 0.71 -9.66 15 13 C -0.07 -3.04 7.08 72.00 0.51 -2.53 15 14 S -0.36 -15.07 24.58 -56.49 -1.39 -16.46 15 15 C -0.04 -1.81 6.61 72.00 0.48 -1.33 15 16 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 17 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 18 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 19 H 0.04 1.53 6.77 -2.38 -0.02 1.52 15 20 H 0.03 1.44 7.47 -2.39 -0.02 1.42 15 21 H 0.27 15.92 5.47 -92.71 -0.51 15.42 15 22 H 0.11 4.23 8.11 -2.39 -0.02 4.21 15 23 H 0.09 3.43 6.85 -2.39 -0.02 3.41 15 24 H 0.07 3.31 7.41 -2.38 -0.02 3.30 15 25 H 0.11 4.73 8.11 -2.39 -0.02 4.71 15 Total: -1.00 -58.00 223.73 3.87 -54.12 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.43 Total: 11.61 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 2.81 Total: -25.49 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.29 Total: -51.97 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.32 Total: -20.21 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.05 Total: 48.40 kcal Atomic # 16 Polarization: -15.07 SS G_CDS: -1.39 Total: -16.46 kcal Total: -58.00 3.87 -54.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261324252.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.584 kcal (2) G-P(sol) polarization free energy of solvation -57.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds