Wall clock time and date at job start Mon Mar 30 2020 02:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47005 * 2 1 4 4 F 1.39895 * 109.46884 * 119.99187 * 2 1 3 5 5 C 1.52995 * 109.47229 * 239.99463 * 2 1 3 6 6 C 1.50703 * 110.45775 * 57.67071 * 5 2 1 7 7 H 1.08003 * 119.99420 * 242.45486 * 6 5 2 8 8 C 1.37872 * 120.00366 * 62.72434 * 6 5 2 9 9 N 1.31518 * 119.99894 * 5.98332 * 8 6 5 10 10 Si 1.86801 * 120.00158 * 185.98441 * 8 6 5 11 11 H 1.48495 * 109.47212 * 90.00208 * 10 8 6 12 12 H 1.48498 * 109.47357 * 210.00285 * 10 8 6 13 13 H 1.48501 * 109.46945 * 330.00019 * 10 8 6 14 14 C 1.54511 * 110.51417 * 295.05839 * 5 2 1 15 15 C 1.54478 * 104.06468 * 241.22106 * 14 5 2 16 16 O 1.44425 * 104.80316 * 23.97698 * 15 14 5 17 17 C 1.44428 * 105.27622 * 319.48789 * 16 15 14 18 18 H 1.09001 * 109.46861 * 175.64788 * 1 2 3 19 19 H 1.08993 * 109.47509 * 295.65493 * 1 2 3 20 20 H 1.09005 * 109.47266 * 55.65677 * 1 2 3 21 21 H 0.96997 * 119.99611 * 179.97438 * 9 8 6 22 22 H 1.09003 * 110.50609 * 359.86496 * 14 5 2 23 23 H 1.08997 * 110.50756 * 122.43688 * 14 5 2 24 24 H 1.08997 * 110.37146 * 142.80786 * 15 14 5 25 25 H 1.08998 * 110.37155 * 265.04153 * 15 14 5 26 26 H 1.08992 * 110.37325 * 281.67859 * 17 16 15 27 27 H 1.09001 * 110.37122 * 159.33988 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6593 1.1423 5 6 2.0400 -0.7213 -1.2491 6 6 1.5037 -0.0624 -2.4938 7 1 0.8622 -0.6154 -3.1639 8 6 1.8364 1.2447 -2.7799 9 7 2.7134 1.8787 -2.0325 10 14 1.0416 2.1150 -4.2292 11 1 -0.2016 2.7911 -3.7793 12 1 1.9831 3.1239 -4.7777 13 1 0.7116 1.1218 -5.2827 14 6 1.6426 -2.2140 -1.2126 15 6 2.9940 -2.9625 -1.2173 16 8 3.9431 -2.0138 -0.6833 17 6 3.5845 -0.7445 -1.2717 18 1 -0.3633 -1.0247 -0.0780 19 1 -0.3634 0.4449 0.9263 20 1 -0.3634 0.5798 -0.8485 21 1 2.9478 2.7981 -2.2341 22 1 1.0849 -2.4385 -0.3034 23 1 1.0562 -2.4747 -2.0935 24 1 2.9409 -3.8455 -0.5805 25 1 3.2680 -3.2444 -2.2339 26 1 3.9500 -0.6847 -2.2968 27 1 3.9850 0.0762 -0.6766 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:50 Heat of formation + Delta-G solvation = -110.439148 kcal Electronic energy + Delta-G solvation = -12583.787319 eV Core-core repulsion = 10255.551523 eV Total energy + Delta-G solvation = -2328.235796 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.33374 -38.21905 -34.04205 -31.41116 -29.14742 -27.76251 -24.79948 -22.10250 -21.67447 -18.82793 -16.63952 -15.39387 -14.89783 -14.54715 -14.44975 -13.98933 -13.52664 -13.15209 -12.04278 -11.83155 -11.49044 -11.42036 -11.09679 -10.91359 -10.77231 -10.56827 -10.33814 -9.81333 -9.53987 -9.25396 -8.86120 -8.61528 -8.43477 -6.23527 -4.26816 3.19476 3.28063 3.30083 4.26813 5.05996 5.18446 5.73629 5.83019 6.04143 6.05679 6.15745 6.27712 6.43192 6.57096 6.68485 6.73353 6.90516 7.04231 7.12524 7.17889 7.37190 7.59179 7.75381 7.88244 8.28949 8.74529 9.37394 10.84882 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.043049 B = 0.017306 C = 0.015425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.263882 B = 1617.524906 C = 1814.792307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 H 0.097 0.903 4 F -0.238 7.238 5 C 0.029 3.971 6 C -0.508 4.508 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.887 5.887 10 Si 0.895 3.105 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.273 1.273 14 C -0.145 4.145 15 C 0.052 3.948 16 O -0.398 6.398 17 C 0.075 3.925 18 H 0.049 0.951 19 H 0.038 0.962 20 H 0.077 0.923 21 H 0.266 0.734 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 -3.145 0.589 4.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.115 0.885 4 F -0.219 7.219 5 C 0.028 3.972 6 C -0.546 4.546 7 H 0.082 0.918 8 C -0.137 4.137 9 N -0.524 5.524 10 Si 0.723 3.277 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.198 1.198 14 C -0.183 4.183 15 C -0.026 4.026 16 O -0.318 6.318 17 C -0.001 4.001 18 H 0.068 0.932 19 H 0.057 0.943 20 H 0.096 0.904 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.208 -3.012 0.778 3.814 hybrid contribution -0.585 0.648 -0.935 1.279 sum -2.793 -2.363 -0.157 3.662 Atomic orbital electron populations 1.22176 0.96319 1.01717 1.01230 1.21777 0.93261 0.97957 0.81394 0.88548 1.92677 1.90645 1.84158 1.54439 1.19909 0.93018 0.90379 0.93862 1.20958 1.30570 0.97089 1.05941 0.91791 1.25025 0.94524 0.97518 0.96658 1.69897 1.31091 1.12149 1.39280 0.86527 0.79253 0.79481 0.82471 1.20476 1.21132 1.19800 1.23024 0.96921 0.97498 1.00837 1.23165 0.89393 0.92790 0.97208 1.88981 1.53689 1.19982 1.69144 1.23519 0.96032 0.83479 0.97064 0.93222 0.94316 0.90376 0.92425 0.92425 0.91545 0.91269 0.93758 0.93060 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.16 37.16 0.34 -2.91 15 2 C 0.09 2.19 2.85 -26.73 -0.08 2.11 15 3 H 0.10 2.47 6.68 -51.93 -0.35 2.13 15 4 F -0.24 -5.76 16.22 2.25 0.04 -5.73 15 5 C 0.03 0.70 0.29 -154.09 -0.05 0.66 15 6 C -0.51 -12.80 6.67 -34.44 -0.23 -13.03 15 7 H 0.06 1.60 7.40 -52.48 -0.39 1.21 15 8 C 0.07 1.67 5.19 -17.82 -0.09 1.57 15 9 N -0.89 -23.33 10.64 55.43 0.59 -22.74 15 10 Si 0.90 19.92 29.54 -169.99 -5.02 14.89 15 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 14 C -0.15 -3.09 5.57 -25.16 -0.14 -3.23 15 15 C 0.05 1.05 7.63 37.93 0.29 1.34 15 16 O -0.40 -9.52 11.65 -35.23 -0.41 -9.93 15 17 C 0.08 1.87 5.34 37.94 0.20 2.08 15 18 H 0.05 0.96 6.74 -51.93 -0.35 0.61 15 19 H 0.04 0.72 8.14 -51.93 -0.42 0.29 15 20 H 0.08 1.66 7.37 -51.93 -0.38 1.27 15 21 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 22 H 0.06 1.19 6.50 -51.93 -0.34 0.85 15 23 H 0.07 1.34 7.46 -51.93 -0.39 0.96 15 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.04 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.05 1.32 7.86 -51.93 -0.41 0.92 15 27 H 0.08 2.22 7.58 -51.93 -0.39 1.82 15 LS Contribution 222.40 15.07 3.35 3.35 Total: -1.00 -26.68 222.40 -4.60 -31.28 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.40 Total: 0.27 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 0.25 Total: -11.40 kcal Atomic # 7 Polarization: -23.33 SS G_CDS: 0.59 Total: -22.74 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.41 Total: -9.93 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.04 Total: -5.73 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -26.68 -4.60 -31.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.157 kcal (2) G-P(sol) polarization free energy of solvation -26.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds