Wall clock time and date at job start Mon Mar 30 2020 02:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46897 * 2 1 4 4 F 1.39899 * 109.46909 * 120.00530 * 2 1 3 5 5 C 1.53002 * 109.47058 * 240.00299 * 2 1 3 6 6 C 1.50694 * 110.45997 * 62.92250 * 5 2 1 7 7 H 1.07997 * 120.00080 * 264.51236 * 6 5 2 8 8 C 1.37878 * 120.00044 * 84.50946 * 6 5 2 9 9 N 1.31517 * 120.00289 * 169.09939 * 8 6 5 10 10 Si 1.86804 * 119.99776 * 349.09888 * 8 6 5 11 11 H 1.48498 * 109.47145 * 95.10190 * 10 8 6 12 12 H 1.48500 * 109.46872 * 215.09953 * 10 8 6 13 13 H 1.48503 * 109.47191 * 335.09775 * 10 8 6 14 14 C 1.54514 * 110.50883 * 185.52917 * 5 2 1 15 15 C 1.54487 * 104.05984 * 118.64343 * 14 5 2 16 16 O 1.44421 * 104.80380 * 23.97877 * 15 14 5 17 17 C 1.44420 * 105.27503 * 319.48567 * 16 15 14 18 18 H 1.08994 * 109.47440 * 295.57734 * 1 2 3 19 19 H 1.09000 * 109.46971 * 55.57976 * 1 2 3 20 20 H 1.09007 * 109.47428 * 175.57314 * 1 2 3 21 21 H 0.96991 * 119.99842 * 180.02562 * 9 8 6 22 22 H 1.08993 * 110.50991 * 237.28384 * 14 5 2 23 23 H 1.08994 * 110.51161 * 359.86351 * 14 5 2 24 24 H 1.09008 * 110.36675 * 142.80772 * 15 14 5 25 25 H 1.08993 * 110.37091 * 265.03176 * 15 14 5 26 26 H 1.09003 * 110.37145 * 281.67873 * 17 16 15 27 27 H 1.09005 * 110.37119 * 159.34632 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6596 1.1422 5 6 2.0400 -0.7212 -1.2493 6 6 1.6096 0.0121 -2.4934 7 1 0.7152 -0.2915 -3.0171 8 6 2.3577 1.0708 -2.9632 9 7 2.1118 1.5728 -4.1537 10 14 3.7206 1.7921 -1.9087 11 1 5.0170 1.1724 -2.2835 12 1 3.7917 3.2592 -2.1273 13 1 3.4364 1.5181 -0.4771 14 6 3.5785 -0.8571 -1.2058 15 6 3.8208 -2.3828 -1.2111 16 8 2.6357 -2.9425 -1.8177 17 6 1.5349 -2.1809 -1.2758 18 1 -0.3634 0.4436 0.9269 19 1 -0.3633 0.5809 -0.8477 20 1 -0.3634 -1.0246 -0.0793 21 1 2.6383 2.3173 -4.4842 22 1 4.0276 -0.3960 -2.0854 23 1 3.9760 -0.4084 -0.2955 24 1 4.7019 -2.6249 -1.8056 25 1 3.9382 -2.7519 -0.1923 26 1 1.2996 -2.5194 -0.2667 27 1 0.6598 -2.2679 -1.9198 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327150.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:55 Heat of formation + Delta-G solvation = -94.608039 kcal Electronic energy + Delta-G solvation = -12648.216710 eV Core-core repulsion = 10320.667403 eV Total energy + Delta-G solvation = -2327.549308 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.84953 -38.62862 -34.12493 -31.78737 -30.01876 -27.71399 -24.92682 -23.00356 -21.62992 -19.21866 -16.72276 -15.82544 -15.44327 -15.34478 -14.26708 -14.12063 -13.91504 -13.23523 -12.86992 -12.14756 -12.03257 -11.63867 -11.36859 -11.20583 -10.86309 -10.54273 -10.05473 -10.01469 -9.69100 -9.31352 -9.13606 -8.82065 -8.54782 -6.23610 -4.22843 3.15693 3.23577 3.30164 4.24407 4.72684 5.04376 5.39912 5.62165 5.71643 5.75056 5.85852 5.91355 6.00623 6.11205 6.29639 6.42704 6.48415 6.54762 6.70086 6.80654 6.92065 7.04934 7.53788 7.68917 8.34228 8.79773 9.37694 10.88044 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.034485 B = 0.021859 C = 0.019370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.756114 B = 1280.653161 C = 1445.153232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 H 0.081 0.919 4 F -0.236 7.236 5 C 0.001 3.999 6 C -0.503 4.503 7 H 0.081 0.919 8 C 0.075 3.925 9 N -0.886 5.886 10 Si 0.876 3.124 11 H -0.281 1.281 12 H -0.297 1.297 13 H -0.253 1.253 14 C -0.171 4.171 15 C 0.056 3.944 16 O -0.376 6.376 17 C 0.065 3.935 18 H 0.046 0.954 19 H 0.085 0.915 20 H 0.056 0.944 21 H 0.266 0.734 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -2.739 7.284 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.099 0.901 4 F -0.217 7.217 5 C -0.001 4.001 6 C -0.540 4.540 7 H 0.099 0.901 8 C -0.128 4.128 9 N -0.522 5.522 10 Si 0.707 3.293 11 H -0.208 1.208 12 H -0.225 1.225 13 H -0.178 1.178 14 C -0.208 4.208 15 C -0.021 4.021 16 O -0.295 6.295 17 C -0.011 4.011 18 H 0.065 0.935 19 H 0.104 0.896 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.894 -2.790 7.002 7.590 hybrid contribution 0.869 0.733 0.635 1.303 sum 1.763 -2.057 7.637 8.103 Atomic orbital electron populations 1.22201 0.94916 1.02655 1.02238 1.22403 0.94855 0.96853 0.81700 0.90096 1.92680 1.90609 1.83906 1.54493 1.20346 0.91316 0.93945 0.94471 1.20649 1.12099 1.14662 1.06627 0.90064 1.25074 0.96898 0.96490 0.94372 1.69908 1.40863 1.25267 1.16196 0.87285 0.82651 0.77258 0.82133 1.20756 1.22505 1.17840 1.23488 0.98922 0.96825 1.01605 1.23189 0.89321 0.92820 0.96809 1.89003 1.15647 1.57399 1.67467 1.23446 0.90362 0.90601 0.96726 0.93475 0.89574 0.92518 0.92376 0.89978 0.91898 0.90352 0.93368 0.94034 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.22 37.16 0.34 -2.64 15 2 C 0.08 1.64 2.73 -26.73 -0.07 1.57 15 3 H 0.08 1.76 5.17 -51.93 -0.27 1.49 15 4 F -0.24 -4.89 15.79 2.25 0.04 -4.85 15 5 C 0.00 0.02 0.28 -154.09 -0.04 -0.03 15 6 C -0.50 -13.30 7.68 -34.44 -0.26 -13.57 15 7 H 0.08 2.32 7.87 -52.49 -0.41 1.91 15 8 C 0.07 2.05 5.19 -17.82 -0.09 1.96 15 9 N -0.89 -25.97 13.96 55.43 0.77 -25.20 15 10 Si 0.88 20.79 22.99 -169.99 -3.91 16.89 15 11 H -0.28 -6.58 6.74 56.52 0.38 -6.20 15 12 H -0.30 -7.13 7.11 56.52 0.40 -6.73 15 13 H -0.25 -5.62 4.32 56.52 0.24 -5.38 15 14 C -0.17 -3.78 3.83 -25.16 -0.10 -3.88 15 15 C 0.06 1.10 7.63 37.94 0.29 1.39 15 16 O -0.38 -8.37 11.65 -35.23 -0.41 -8.78 15 17 C 0.07 1.39 5.50 37.93 0.21 1.60 15 18 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 19 H 0.09 1.65 7.52 -51.93 -0.39 1.25 15 20 H 0.06 0.97 6.96 -51.92 -0.36 0.61 15 21 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.08 1.96 4.25 -51.93 -0.22 1.74 15 23 H 0.06 1.32 6.26 -51.93 -0.32 1.00 15 24 H 0.08 1.40 8.14 -51.92 -0.42 0.97 15 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.04 0.82 7.17 -51.93 -0.37 0.45 15 27 H 0.09 1.83 7.74 -51.93 -0.40 1.42 15 LS Contribution 210.30 15.07 3.17 3.17 Total: -1.00 -28.66 210.30 -3.40 -32.06 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -3.34 Total: 0.31 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 0.27 Total: -13.59 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.77 Total: -25.20 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.41 Total: -8.78 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.04 Total: -4.85 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -3.91 Total: 16.89 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -28.66 -3.40 -32.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327150.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.548 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds