Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.52998 * 109.52731 * 300.40367 * 9 7 2 11 11 F 1.39907 * 109.46703 * 59.99706 * 10 9 7 12 12 C 1.53180 * 109.52186 * 180.27885 * 9 7 2 13 13 C 1.53179 * 109.03489 * 297.07683 * 12 9 7 14 14 C 1.53084 * 109.16550 * 303.01863 * 13 12 9 15 15 O 1.42905 * 109.41424 * 57.61064 * 14 13 12 16 16 C 1.42902 * 114.09658 * 298.83810 * 15 14 13 17 17 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.47371 * 179.97438 * 10 9 7 19 19 H 1.08997 * 109.47323 * 300.00465 * 10 9 7 20 20 H 1.09001 * 109.54303 * 56.94539 * 12 9 7 21 21 H 1.08996 * 109.54380 * 177.12616 * 12 9 7 22 22 H 1.08998 * 109.52413 * 62.92703 * 13 12 9 23 23 H 1.09004 * 109.51959 * 183.10973 * 13 12 9 24 24 H 1.09001 * 109.48499 * 177.59223 * 14 13 12 25 25 H 1.09007 * 109.48508 * 297.62854 * 14 13 12 26 26 H 1.08996 * 109.48404 * 301.17568 * 16 15 14 27 27 H 1.09001 * 109.48009 * 181.13817 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 0.3688 -2.5746 1.2530 11 9 -0.5408 -1.5116 1.2458 12 6 2.2456 -3.6642 0.0105 13 6 3.0711 -3.6221 -1.2791 14 6 2.1262 -3.6701 -2.4825 15 8 1.2083 -2.5772 -2.4096 16 6 0.3764 -2.5905 -1.2478 17 1 -0.4850 0.8400 0.0004 18 1 -0.1760 -3.5186 1.2562 19 1 0.9934 -2.5121 2.1441 20 1 2.9085 -3.5739 0.8710 21 1 1.7020 -4.6073 0.0663 22 1 3.6529 -2.7008 -1.3093 23 1 3.7434 -4.4795 -1.3094 24 1 2.7056 -3.5973 -3.4029 25 1 1.5739 -4.6098 -2.4739 26 1 -0.1987 -3.5160 -1.2229 27 1 -0.3045 -1.7399 -1.2785 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261333262.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = -100.586612 kcal Electronic energy + Delta-G solvation = -12706.318195 eV Core-core repulsion = 10378.509637 eV Total energy + Delta-G solvation = -2327.808558 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.50359 -39.98826 -35.63848 -33.85135 -31.96445 -27.04761 -26.73771 -25.60093 -22.68770 -20.75081 -17.97594 -17.19708 -16.68551 -16.29729 -15.78794 -15.68960 -15.46245 -14.79337 -14.21760 -14.05411 -13.20666 -13.06208 -12.75701 -12.62562 -12.25175 -12.03401 -11.79501 -11.50925 -11.01287 -10.89202 -10.45722 -10.30104 -9.83648 -7.79256 -5.97979 1.43497 1.45249 1.50981 2.50707 3.29070 3.45649 4.19443 4.27059 4.29741 4.38418 4.51622 4.60755 4.71816 4.80999 4.93443 4.99912 5.10569 5.27331 5.43172 5.53088 5.62443 5.87105 6.04094 6.39723 6.77807 6.93469 7.61006 9.05931 Molecular weight = 188.10amu Principal moments of inertia in cm(-1) A = 0.038226 B = 0.020169 C = 0.016604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.305630 B = 1387.958326 C = 1685.897563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.019 3.981 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.047 0.953 9 C -0.002 4.002 10 C 0.077 3.923 11 F -0.193 7.193 12 C -0.102 4.102 13 C -0.139 4.139 14 C 0.055 3.945 15 O -0.403 6.403 16 C 0.080 3.920 17 H 0.247 0.753 18 H 0.048 0.952 19 H 0.045 0.955 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.019 0.981 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 -7.118 -0.665 7.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.065 0.935 9 C -0.002 4.002 10 C 0.021 3.979 11 F -0.174 7.174 12 C -0.140 4.140 13 C -0.177 4.177 14 C -0.021 4.021 15 O -0.322 6.322 16 C 0.003 3.997 17 H 0.058 0.942 18 H 0.066 0.934 19 H 0.064 0.936 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.818 -6.813 -0.801 7.416 hybrid contribution 0.288 0.984 0.309 1.071 sum 3.107 -5.828 -0.492 6.623 Atomic orbital electron populations 1.70582 1.06185 1.25195 1.48137 1.25594 0.95637 1.01583 0.95471 0.85910 0.78485 0.80656 0.78171 1.20561 1.21531 1.20096 1.20922 0.92166 0.90592 1.52125 0.93460 1.19443 0.93718 0.94983 0.92099 1.22158 0.89845 0.86295 0.99555 1.92935 1.68837 1.58160 1.97466 1.21482 0.97789 0.96861 0.97852 1.22011 0.98474 1.01953 0.95259 1.22650 0.91326 0.89434 0.98711 1.87855 1.52036 1.48945 1.43344 1.22531 0.92204 0.98969 0.85997 0.94232 0.93366 0.93630 0.92474 0.92081 0.92985 0.89494 0.88577 0.93001 0.96296 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.94 7.59 21.45 0.16 -49.78 15 2 C 0.02 1.07 5.05 84.65 0.43 1.50 15 3 Si 0.94 45.11 29.54 68.60 2.03 47.14 15 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 15 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 7 C -0.52 -28.05 7.03 25.60 0.18 -27.87 15 8 H 0.05 2.56 6.91 -2.91 -0.02 2.54 15 9 C 0.00 -0.07 0.50 -52.84 -0.03 -0.10 15 10 C 0.08 3.55 6.35 71.98 0.46 4.01 15 11 F -0.19 -10.44 12.59 44.97 0.57 -9.87 15 12 C -0.10 -3.89 4.77 30.71 0.15 -3.75 15 13 C -0.14 -4.90 5.87 30.68 0.18 -4.72 15 14 C 0.06 1.98 6.84 72.01 0.49 2.47 15 15 O -0.40 -19.01 10.45 -148.98 -1.56 -20.57 15 16 C 0.08 3.87 5.23 72.01 0.38 4.24 15 17 H 0.25 14.03 8.31 -92.71 -0.77 13.26 15 18 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 19 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 20 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.05 2.09 6.88 -2.39 -0.02 2.07 15 23 H 0.09 2.37 8.14 -2.38 -0.02 2.35 15 24 H 0.10 2.96 8.14 -2.39 -0.02 2.94 15 25 H 0.05 1.62 8.14 -2.38 -0.02 1.61 15 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 27 H 0.09 4.81 5.91 -2.39 -0.01 4.79 15 Total: -1.00 -61.40 216.28 4.58 -56.82 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.14 Total: 0.48 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 2.23 Total: -24.22 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.16 Total: -49.78 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.56 Total: -20.57 kcal Atomic # 9 Polarization: -10.44 SS G_CDS: 0.57 Total: -9.87 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -61.40 4.58 -56.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333262.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.766 kcal (2) G-P(sol) polarization free energy of solvation -61.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds