Wall clock time and date at job start Mon Mar 30 2020 01:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81400 * 103.00347 * 2 1 4 4 C 1.53004 * 115.55007 * 64.69842 * 3 2 1 5 5 H 1.09004 * 109.46833 * 321.88301 * 4 3 2 6 6 O 1.42900 * 109.46996 * 201.88153 * 4 3 2 7 7 C 1.50698 * 109.47055 * 81.87977 * 4 3 2 8 8 H 1.08001 * 119.99873 * 5.19717 * 7 4 3 9 9 C 1.37875 * 120.00218 * 185.19641 * 7 4 3 10 10 N 1.31521 * 119.99666 * 359.97438 * 9 7 4 11 11 Si 1.86794 * 120.00472 * 180.02562 * 9 7 4 12 12 H 1.48500 * 109.46752 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47266 * 119.99628 * 11 9 7 14 14 H 1.48504 * 109.46998 * 239.99887 * 11 9 7 15 15 C 1.53002 * 117.49877 * 279.03298 * 3 2 1 16 16 C 1.52995 * 117.50134 * 210.37154 * 3 2 1 17 17 H 1.08996 * 109.47364 * 174.51148 * 1 2 3 18 18 H 1.09009 * 109.47362 * 294.51523 * 1 2 3 19 19 H 1.09005 * 109.47021 * 54.51169 * 1 2 3 20 20 H 0.96696 * 113.99896 * 299.99449 * 6 4 3 21 21 H 0.97003 * 119.99959 * 180.02562 * 10 9 7 22 22 H 1.09001 * 117.49650 * 359.97438 * 15 3 2 23 23 H 1.08997 * 117.50059 * 145.02026 * 15 3 2 24 24 H 1.09002 * 117.50098 * 214.98082 * 16 3 2 25 25 H 1.09009 * 117.49861 * 359.97438 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.7957 2.5432 1.2480 5 1 0.8263 2.1792 1.5885 6 8 1.6990 3.9340 0.9344 7 6 2.8180 2.3437 2.3371 8 1 3.7256 1.7955 2.1319 9 6 2.5946 2.8609 3.5955 10 7 1.4896 3.5289 3.8452 11 14 3.8620 2.6142 4.9453 12 1 5.0080 1.8350 4.4117 13 1 4.3411 3.9364 5.4222 14 1 3.2442 1.8745 6.0752 15 6 2.1734 2.5038 -1.3403 16 6 3.5219 2.1924 -0.6861 17 1 -0.3634 -1.0229 -0.0983 18 1 -0.3634 0.4264 0.9351 19 1 -0.3633 0.5966 -0.8368 20 1 2.5269 4.3257 0.6240 21 1 1.3325 3.8932 4.7304 22 1 1.8966 1.9260 -2.2222 23 1 1.8381 3.5409 -1.3330 24 1 4.0731 3.0248 -0.2487 25 1 4.1320 1.4098 -1.1372 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306300276.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:19 Heat of formation + Delta-G solvation = -49.673291 kcal Electronic energy + Delta-G solvation = -10053.618543 eV Core-core repulsion = 8158.397834 eV Total energy + Delta-G solvation = -1895.220709 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 188.061 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.32821 -35.65081 -34.27065 -29.91406 -29.24850 -25.50277 -23.25545 -21.36627 -19.02194 -17.80364 -16.78302 -16.59919 -15.85957 -15.23058 -14.55257 -14.16187 -14.06886 -13.76573 -13.07065 -12.97383 -12.85396 -12.46565 -12.19755 -11.80016 -11.50167 -11.12066 -10.72708 -10.41583 -10.28599 -8.49082 -8.13532 -6.36178 0.93394 1.38207 1.40263 1.52339 1.72657 2.38637 2.91910 3.13197 3.90959 4.04271 4.12201 4.32310 4.36158 4.43296 4.75920 4.87707 4.94762 5.04822 5.29614 5.54311 5.69498 6.09097 6.74226 7.31048 7.47235 8.90752 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.043165 B = 0.014391 C = 0.013486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.525048 B = 1945.142066 C = 2075.718268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.240 6.240 3 C -0.141 4.141 4 C 0.270 3.730 5 H 0.023 0.977 6 O -0.577 6.577 7 C -0.555 4.555 8 H 0.056 0.944 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 0.956 3.044 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.281 1.281 15 C -0.144 4.144 16 C -0.128 4.128 17 H 0.121 0.879 18 H 0.057 0.943 19 H 0.084 0.916 20 H 0.357 0.643 21 H 0.261 0.739 22 H 0.111 0.889 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 -3.682 -8.086 8.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.011 6.011 3 C -0.251 4.251 4 C 0.211 3.789 5 H 0.040 0.960 6 O -0.382 6.382 7 C -0.593 4.593 8 H 0.074 0.926 9 C -0.178 4.178 10 N -0.545 5.545 11 Si 0.781 3.219 12 H -0.189 1.189 13 H -0.204 1.204 14 H -0.207 1.207 15 C -0.184 4.184 16 C -0.167 4.167 17 H 0.139 0.861 18 H 0.076 0.924 19 H 0.103 0.897 20 H 0.203 0.797 21 H 0.070 0.930 22 H 0.129 0.871 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.307 -4.621 -7.766 9.131 hybrid contribution 0.099 1.016 0.981 1.416 sum 1.406 -3.605 -6.785 7.811 Atomic orbital electron populations 1.23349 0.93175 1.07020 1.04597 1.85868 1.09043 1.08725 1.97432 1.24454 1.08268 0.94043 0.98383 1.18764 0.94729 0.77744 0.87639 0.95951 1.86534 1.37164 1.26262 1.88221 1.21833 1.05683 1.35627 0.96173 0.92610 1.25859 0.97015 0.94025 1.00855 1.70189 1.26530 1.35773 1.22052 0.85551 0.79417 0.77928 0.78971 1.18939 1.20356 1.20677 1.23321 0.99846 1.01615 0.93591 1.22866 0.89903 1.02838 1.01074 0.86057 0.92370 0.89715 0.79688 0.93023 0.87084 0.87804 0.88075 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.60 10.53 113.37 1.19 -2.40 15 2 S -0.24 -9.11 22.29 -56.49 -1.26 -10.36 15 3 C -0.14 -5.72 1.91 -10.79 -0.02 -5.74 15 4 C 0.27 13.76 2.84 29.85 0.08 13.84 15 5 H 0.02 1.32 7.27 -2.39 -0.02 1.30 15 6 O -0.58 -29.08 11.70 -148.98 -1.74 -30.83 15 7 C -0.56 -30.53 8.49 25.60 0.22 -30.31 15 8 H 0.06 3.05 7.68 -2.91 -0.02 3.03 15 9 C 0.02 1.34 5.43 84.65 0.46 1.80 15 10 N -0.91 -54.45 13.05 21.45 0.28 -54.17 15 11 Si 0.96 44.11 29.54 68.60 2.03 46.14 15 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 14 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 15 C -0.14 -4.68 9.56 30.62 0.29 -4.39 15 16 C -0.13 -4.38 9.34 30.62 0.29 -4.09 15 17 H 0.12 3.06 8.14 -2.39 -0.02 3.04 15 18 H 0.06 2.10 7.51 -2.39 -0.02 2.08 15 19 H 0.08 2.44 8.14 -2.39 -0.02 2.42 15 20 H 0.36 15.65 7.76 -74.06 -0.57 15.07 15 21 H 0.26 14.81 8.31 -92.71 -0.77 14.04 15 22 H 0.11 3.12 8.14 -2.39 -0.02 3.10 15 23 H 0.10 3.39 6.99 -2.39 -0.02 3.37 15 24 H 0.10 3.45 7.59 -2.39 -0.02 3.44 15 25 H 0.10 3.24 8.14 -2.38 -0.02 3.23 15 Total: -1.00 -63.81 231.67 2.42 -61.38 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.61 Total: 19.13 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 2.51 Total: -31.29 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.28 Total: -54.17 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.74 Total: -30.83 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.26 Total: -10.36 kcal Total: -63.81 2.42 -61.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306300276.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.710 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds