Wall clock time and date at job start Mon Mar 30 2020 01:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48496 * 109.47474 * 270.00074 * 3 2 1 5 5 H 1.48504 * 109.47121 * 30.00196 * 3 2 1 6 6 H 1.48499 * 109.47026 * 150.00039 * 3 2 1 7 7 C 1.37875 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99955 * 359.97438 * 7 2 1 10 10 O 1.42908 * 109.04842 * 60.00353 * 9 7 2 11 11 C 1.54146 * 109.06298 * 301.00102 * 9 7 2 12 12 O 1.40151 * 108.56276 * 161.61291 * 11 9 7 13 13 C 1.44597 * 117.05182 * 93.08594 * 12 11 9 14 14 C 1.54066 * 111.99212 * 318.63811 * 13 12 11 15 15 O 1.40094 * 112.64792 * 318.95355 * 14 13 12 16 16 C 1.44213 * 113.23077 * 93.03797 * 15 14 13 17 17 H 0.97003 * 119.99476 * 359.97438 * 1 2 3 18 18 H 0.96699 * 114.00099 * 300.00199 * 10 9 7 19 19 H 1.09002 * 109.61876 * 281.40991 * 11 9 7 20 20 H 1.09005 * 109.62434 * 41.94445 * 11 9 7 21 21 H 1.08993 * 108.98190 * 197.99052 * 13 12 11 22 22 H 1.09002 * 108.98022 * 79.28119 * 13 12 11 23 23 H 1.08996 * 108.84931 * 198.13453 * 14 13 12 24 24 H 1.09003 * 108.84438 * 79.76737 * 14 13 12 25 25 H 1.08997 * 109.06153 * 159.62591 * 16 15 14 26 26 H 1.09004 * 109.05513 * 40.70767 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4324 -2.5651 -1.1701 11 6 0.3498 -2.5602 1.2486 12 8 -0.6344 -3.5362 1.0414 13 6 -0.3493 -4.8700 1.5214 14 6 1.1075 -5.2852 1.2403 15 8 1.5466 -4.8869 -0.0290 16 6 2.2121 -3.6075 -0.0252 17 1 -0.4849 0.8401 0.0004 18 1 -0.2202 -1.8545 -1.2341 19 1 0.9496 -2.8229 2.1201 20 1 -0.1240 -1.5913 1.4059 21 1 -1.0198 -5.5747 1.0295 22 1 -0.5268 -4.9056 2.5962 23 1 1.1854 -6.3697 1.3155 24 1 1.7536 -4.8347 1.9938 25 1 2.8285 -3.5242 -0.9202 26 1 2.8530 -3.5424 0.8542 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307491378.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:05 Heat of formation + Delta-G solvation = -156.029048 kcal Electronic energy + Delta-G solvation = -12671.141201 eV Core-core repulsion = 10328.555689 eV Total energy + Delta-G solvation = -2342.585512 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.088 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.78454 -37.50564 -37.18060 -34.17332 -32.11569 -29.99124 -27.29581 -26.72460 -22.81729 -21.75078 -19.25309 -18.11783 -17.39592 -16.97525 -16.70908 -16.12009 -15.42381 -15.24136 -14.69238 -14.61174 -13.61614 -13.19559 -13.01097 -12.67635 -12.49828 -12.24582 -12.17918 -11.82229 -11.27720 -10.91429 -10.64927 -10.37432 -9.61995 -8.21469 -6.44910 1.41772 1.43816 1.53539 2.35579 2.82825 3.03329 3.30649 3.94361 4.05471 4.17669 4.38510 4.47338 4.55621 4.55709 4.71075 4.94857 5.07164 5.21542 5.50958 5.74128 6.00936 6.40791 6.63036 6.71972 7.28393 7.50394 8.79302 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.065528 B = 0.014391 C = 0.013341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.196063 B = 1945.245838 C = 2098.242374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.028 3.972 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.571 4.571 8 H 0.063 0.937 9 C 0.183 3.817 10 O -0.585 6.585 11 C 0.053 3.947 12 O -0.406 6.406 13 C 0.023 3.977 14 C 0.023 3.977 15 O -0.387 6.387 16 C 0.083 3.917 17 H 0.272 0.728 18 H 0.369 0.631 19 H 0.034 0.966 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.073 0.927 23 H 0.119 0.881 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -5.162 4.743 7.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.793 3.207 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.609 4.609 8 H 0.082 0.918 9 C 0.143 3.857 10 O -0.393 6.393 11 C -0.024 4.024 12 O -0.326 6.326 13 C -0.054 4.054 14 C -0.055 4.055 15 O -0.306 6.306 16 C 0.007 3.993 17 H 0.082 0.918 18 H 0.217 0.783 19 H 0.053 0.947 20 H 0.112 0.888 21 H 0.111 0.889 22 H 0.091 0.909 23 H 0.137 0.863 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.259 -5.660 4.385 7.508 hybrid contribution 0.177 1.592 0.392 1.649 sum 2.436 -4.068 4.776 6.731 Atomic orbital electron populations 1.69733 1.07047 1.28402 1.49826 1.25795 0.95832 1.02701 0.92880 0.85414 0.78685 0.78416 0.78227 1.20373 1.20421 1.19039 1.21958 0.93959 0.91895 1.53119 0.91849 1.19122 0.88708 0.93522 0.84381 1.86208 1.53040 1.54655 1.45355 1.23067 0.90947 0.91757 0.96623 1.87429 1.43796 1.18603 1.82738 1.23937 0.97910 0.84210 0.99308 1.23101 0.94705 1.01975 0.85710 1.87673 1.76564 1.36145 1.30207 1.21779 0.93688 0.81779 1.02032 0.91849 0.78279 0.94737 0.88801 0.88894 0.90866 0.86285 0.92707 0.90246 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.36 9.61 21.45 0.21 -49.15 15 2 C 0.03 1.49 5.10 84.65 0.43 1.92 15 3 Si 0.97 41.50 29.54 68.60 2.03 43.53 15 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.28 -11.64 7.11 99.48 0.71 -10.94 15 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 7 C -0.57 -30.56 8.18 25.60 0.21 -30.36 15 8 H 0.06 3.28 7.72 -2.91 -0.02 3.26 15 9 C 0.18 9.43 0.66 -13.09 -0.01 9.42 15 10 O -0.59 -33.48 12.27 -124.32 -1.53 -35.00 15 11 C 0.05 2.62 5.35 72.37 0.39 3.01 15 12 O -0.41 -19.22 9.78 -116.54 -1.14 -20.36 15 13 C 0.02 0.79 7.14 72.34 0.52 1.31 15 14 C 0.02 0.75 6.11 72.34 0.44 1.19 15 15 O -0.39 -16.52 10.39 -119.97 -1.25 -17.77 15 16 C 0.08 3.73 4.93 70.04 0.35 4.08 15 17 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 18 H 0.37 21.74 7.09 -74.06 -0.53 21.22 15 19 H 0.03 1.53 7.07 -2.39 -0.02 1.51 15 20 H 0.09 5.12 5.73 -2.38 -0.01 5.11 15 21 H 0.09 2.96 8.14 -2.39 -0.02 2.94 15 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.12 2.97 8.14 -2.39 -0.02 2.95 15 24 H 0.05 1.69 6.75 -2.39 -0.02 1.67 15 25 H 0.08 3.61 8.14 -2.39 -0.02 3.59 15 26 H 0.07 2.83 7.48 -2.39 -0.02 2.81 15 Total: -1.00 -61.58 213.10 1.30 -60.28 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.66 Total: 27.90 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 2.32 Total: -9.42 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.21 Total: -49.15 kcal Atomic # 8 Polarization: -69.22 SS G_CDS: -3.91 Total: -73.13 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -61.58 1.30 -60.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307491378.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.751 kcal (2) G-P(sol) polarization free energy of solvation -61.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds