Wall clock time and date at job start Mon Mar 30 2020 02:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48500 * 109.46698 * 269.99774 * 3 2 1 5 5 H 1.48500 * 109.47203 * 29.99975 * 3 2 1 6 6 H 1.48503 * 109.46771 * 150.00052 * 3 2 1 7 7 C 1.38816 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99893 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99929 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00072 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.82483 * 336.11745 * 10 9 7 12 12 C 1.53520 * 113.58552 * 205.00246 * 10 9 7 13 13 C 1.51611 * 87.33695 * 245.29268 * 12 10 9 14 14 C 1.38247 * 147.70205 * 179.89292 * 13 12 10 15 15 C 1.38097 * 120.40784 * 180.02562 * 14 13 12 16 16 C 1.38244 * 119.95386 * 0.07100 * 15 14 13 17 17 C 1.38087 * 119.95686 * 0.02562 * 16 15 14 18 18 C 1.38368 * 120.32790 * 359.97438 * 17 16 15 19 19 H 0.96998 * 119.99304 * 0.02562 * 1 2 3 20 20 H 0.97007 * 119.99523 * 0.02562 * 9 7 2 21 21 H 1.09002 * 113.59033 * 359.92420 * 12 10 9 22 22 H 1.08995 * 113.58515 * 130.65994 * 12 10 9 23 23 H 1.08001 * 119.75648 * 0.12725 * 14 13 12 24 24 H 1.08006 * 120.01970 * 180.02562 * 15 14 13 25 25 H 1.08006 * 120.02113 * 179.97438 * 16 15 14 26 26 H 1.08003 * 119.83465 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1121 -2.4711 0.0011 11 1 3.5281 -3.2961 0.4090 12 6 5.5237 -2.3649 0.5951 13 6 6.0533 -2.6977 -0.7859 14 6 7.1535 -2.9093 -1.5959 15 6 6.9889 -3.2168 -2.9321 16 6 5.7177 -3.3129 -3.4668 17 6 4.6142 -3.1009 -2.6642 18 6 4.7734 -2.7926 -1.3248 19 1 -0.4849 0.8401 -0.0004 20 1 3.8646 -0.3622 -0.0004 21 1 5.7814 -1.3603 0.9306 22 1 5.7414 -3.1288 1.3415 23 1 8.1474 -2.8352 -1.1801 24 1 7.8528 -3.3813 -3.5591 25 1 5.5877 -3.5529 -4.5118 26 1 3.6220 -3.1761 -3.0841 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307516310.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:32 Heat of formation + Delta-G solvation = 55.678776 kcal Electronic energy + Delta-G solvation = -10908.168132 eV Core-core repulsion = 8952.479063 eV Total energy + Delta-G solvation = -1955.689069 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 189.085 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.18171 -37.19332 -35.00172 -32.66492 -31.47984 -28.05278 -25.90491 -24.16862 -22.25156 -21.06866 -19.72141 -17.49806 -16.94876 -16.27073 -15.78055 -15.42453 -14.80624 -14.53918 -14.03886 -13.79149 -13.24722 -13.04110 -12.85062 -12.65727 -12.18012 -11.97789 -11.79054 -11.21349 -11.03381 -9.70929 -9.52837 -9.35914 -8.07992 -5.43626 0.47810 0.54932 1.34711 1.38197 1.45288 2.43735 2.89941 3.19115 3.40961 3.57435 3.71651 3.97229 4.25435 4.29617 4.45690 4.74263 4.83099 4.90472 5.03865 5.14245 5.28056 5.57039 5.64919 5.68743 5.97776 6.15783 6.20358 6.99646 7.73540 7.93987 9.13065 Molecular weight = 189.08amu Principal moments of inertia in cm(-1) A = 0.052214 B = 0.010567 C = 0.010282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.125456 B = 2649.174176 C = 2722.577905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.953 3.047 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.249 1.249 7 C -0.241 4.241 8 H 0.059 0.941 9 N -0.731 5.731 10 C 0.206 3.794 11 H 0.081 0.919 12 C -0.068 4.068 13 C -0.140 4.140 14 C -0.103 4.103 15 C -0.122 4.122 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.172 4.172 19 H 0.260 0.740 20 H 0.368 0.632 21 H 0.092 0.908 22 H 0.115 0.885 23 H 0.142 0.858 24 H 0.158 0.842 25 H 0.145 0.855 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.371 -4.981 -3.152 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.249 4.249 3 Si 0.780 3.220 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.174 1.174 7 C -0.372 4.372 8 H 0.077 0.923 9 N -0.371 5.371 10 C 0.096 3.904 11 H 0.099 0.901 12 C -0.106 4.106 13 C -0.141 4.141 14 C -0.121 4.121 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.136 4.136 18 C -0.175 4.175 19 H 0.069 0.931 20 H 0.202 0.798 21 H 0.110 0.890 22 H 0.133 0.867 23 H 0.160 0.840 24 H 0.175 0.825 25 H 0.163 0.837 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.118 -5.045 -3.129 17.177 hybrid contribution -0.397 1.010 -0.235 1.111 sum 15.721 -4.034 -3.364 16.575 Atomic orbital electron populations 1.69879 1.07083 1.26887 1.59050 1.25490 0.96111 1.01199 1.02107 0.85444 0.78892 0.79699 0.77985 1.20921 1.21610 1.17367 1.19080 0.82285 0.93726 1.42062 0.92270 1.42556 1.02592 1.03221 1.88680 1.20677 0.91990 0.88363 0.89390 0.90137 1.22236 0.91965 1.03306 0.93119 1.22466 0.94033 0.99990 0.97634 1.20575 0.98076 1.00103 0.93346 1.21346 0.97723 0.99933 0.94957 1.21289 0.92237 1.00614 1.00250 1.20624 0.99304 1.00583 0.93048 1.24017 0.98944 0.98296 0.96285 0.93109 0.79828 0.88958 0.86692 0.83997 0.82482 0.83742 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.20 13.97 21.65 0.30 -62.90 15 2 C -0.06 -3.41 5.50 84.86 0.47 -2.94 15 3 Si 0.95 45.97 27.74 68.60 1.90 47.87 15 4 H -0.28 -13.54 7.11 99.48 0.71 -12.84 15 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 6 H -0.25 -10.79 6.52 99.48 0.65 -10.14 15 7 C -0.24 -14.00 10.45 84.03 0.88 -13.12 15 8 H 0.06 3.75 8.06 -2.91 -0.02 3.73 15 9 N -0.73 -35.27 5.19 -324.31 -1.68 -36.96 15 10 C 0.21 8.25 4.65 44.70 0.21 8.45 15 11 H 0.08 3.29 8.10 -2.39 -0.02 3.27 15 12 C -0.07 -2.08 7.99 30.30 0.24 -1.84 15 13 C -0.14 -4.43 7.50 -19.35 -0.15 -4.58 15 14 C -0.10 -2.66 10.02 22.24 0.22 -2.44 15 15 C -0.12 -2.90 10.04 22.24 0.22 -2.68 15 16 C -0.13 -3.48 10.04 22.24 0.22 -3.26 15 17 C -0.12 -4.16 10.03 22.26 0.22 -3.94 15 18 C -0.17 -6.52 7.27 -19.32 -0.14 -6.66 15 19 H 0.26 15.91 8.31 -92.71 -0.77 15.14 15 20 H 0.37 17.06 5.74 -92.70 -0.53 16.52 15 21 H 0.09 2.69 8.07 -2.39 -0.02 2.67 15 22 H 0.11 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.14 2.74 8.06 -2.91 -0.02 2.72 15 24 H 0.16 2.52 8.06 -2.91 -0.02 2.49 15 25 H 0.14 3.11 8.06 -2.91 -0.02 3.09 15 26 H 0.10 3.72 8.06 -2.91 -0.02 3.70 15 Total: -1.00 -68.59 229.78 3.51 -65.09 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.58 Total: 19.90 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 2.40 Total: -33.00 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -1.38 Total: -99.86 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.87 kcal Total: -68.59 3.51 -65.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307516310.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.764 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds