Wall clock time and date at job start Mon Mar 30 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86802 * 119.99653 * 2 1 4 4 H 1.48494 * 109.47254 * 270.00309 * 3 2 1 5 5 H 1.48502 * 109.46810 * 30.00238 * 3 2 1 6 6 H 1.48497 * 109.47123 * 149.99828 * 3 2 1 7 7 C 1.38632 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99863 * 359.97438 * 7 2 1 9 9 O 1.34923 * 120.00270 * 180.02562 * 7 2 1 10 10 C 1.42898 * 117.00190 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.52216 * 329.99450 * 10 9 7 12 12 C 1.53096 * 109.57526 * 90.15482 * 10 9 7 13 13 O 1.42900 * 109.41227 * 177.54818 * 12 10 9 14 14 C 1.42903 * 114.09799 * 298.83514 * 13 12 10 15 15 C 1.53101 * 109.41341 * 61.16062 * 14 13 12 16 16 C 1.53169 * 109.16257 * 302.39403 * 15 14 13 17 17 H 1.09001 * 109.62173 * 297.06680 * 16 15 14 18 18 O 1.42902 * 109.54278 * 176.84242 * 16 15 14 19 19 H 0.96995 * 120.00741 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47563 * 297.52951 * 12 10 9 21 21 H 1.08998 * 109.47809 * 57.56104 * 12 10 9 22 22 H 1.09000 * 109.48406 * 301.18330 * 14 13 12 23 23 H 1.08996 * 109.48598 * 181.14374 * 14 13 12 24 24 H 1.08995 * 109.51980 * 182.48325 * 15 14 13 25 25 H 1.09001 * 109.51638 * 62.29759 * 15 14 13 26 26 H 0.96704 * 113.99566 * 60.44745 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0466 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5473 1.4403 0.7001 7 6 2.0091 -1.2005 -0.0005 8 1 1.4691 -2.1359 -0.0005 9 8 3.3583 -1.2005 0.0000 10 6 4.0072 -2.4737 -0.0012 11 1 3.3797 -3.2028 0.5115 12 6 4.2441 -2.9273 -1.4441 13 8 4.9437 -4.1733 -1.4414 14 6 6.2311 -4.1183 -0.8235 15 6 6.0741 -3.7124 0.6444 16 6 5.3548 -2.3621 0.7185 17 1 5.9630 -1.5965 0.2369 18 8 5.1384 -2.0102 2.0865 19 1 -0.4851 0.8399 0.0004 20 1 3.2857 -3.0497 -1.9486 21 1 4.8377 -2.1781 -1.9678 22 1 6.8508 -3.3846 -1.3391 23 1 6.7042 -5.0985 -0.8809 24 1 7.0578 -3.6270 1.1059 25 1 5.4883 -4.4665 1.1701 26 1 5.9510 -1.9223 2.6032 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606246791.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:07 Heat of formation + Delta-G solvation = -160.494434 kcal Electronic energy + Delta-G solvation = -12143.079669 eV Core-core repulsion = 9800.300523 eV Total energy + Delta-G solvation = -2342.779146 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.75122 -38.15781 -37.48260 -34.18728 -32.71795 -31.18080 -26.73851 -25.45631 -24.01931 -21.51747 -19.82391 -18.48314 -18.08859 -17.16065 -16.76179 -16.09876 -15.63399 -15.31826 -14.63508 -14.45795 -14.20053 -13.86068 -13.56850 -13.04997 -12.63823 -12.25334 -12.03086 -11.77044 -11.63797 -11.28902 -10.91349 -10.76188 -10.28633 -8.29290 -6.00024 1.35523 1.40286 1.59380 2.42330 2.73368 3.02381 3.12876 3.40327 3.73698 3.86971 4.05717 4.15565 4.16819 4.54122 4.57853 4.71818 4.78739 4.84479 5.02752 5.16968 5.52606 6.05034 6.19183 6.94116 7.08829 7.73159 8.86747 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.053448 B = 0.012659 C = 0.011507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.746044 B = 2211.413720 C = 2432.736868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.015 4.015 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.358 4.358 8 H 0.044 0.956 9 O -0.326 6.326 10 C 0.069 3.931 11 H 0.031 0.969 12 C 0.056 3.944 13 O -0.395 6.395 14 C 0.052 3.948 15 C -0.173 4.173 16 C 0.105 3.895 17 H 0.069 0.931 18 O -0.578 6.578 19 H 0.275 0.725 20 H 0.084 0.916 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.127 0.873 24 H 0.119 0.881 25 H 0.068 0.932 26 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.211 -5.033 -0.253 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.208 4.208 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.436 4.436 8 H 0.062 0.938 9 O -0.242 6.242 10 C 0.010 3.990 11 H 0.049 0.951 12 C -0.021 4.021 13 O -0.314 6.314 14 C -0.024 4.024 15 C -0.210 4.210 16 C 0.046 3.954 17 H 0.087 0.913 18 O -0.386 6.386 19 H 0.084 0.916 20 H 0.102 0.898 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.144 0.856 24 H 0.137 0.863 25 H 0.087 0.913 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 15.514 -4.961 -0.520 16.296 hybrid contribution 0.100 0.541 0.399 0.680 sum 15.615 -4.420 -0.121 16.228 Atomic orbital electron populations 1.69800 1.06956 1.28540 1.54746 1.25225 0.95835 1.02083 0.97616 0.85079 0.78442 0.77493 0.78775 1.19197 1.20432 1.19007 1.20369 0.79791 0.94093 1.49350 0.93807 1.85201 1.18733 1.26776 1.93523 1.22688 0.93713 0.86634 0.95956 0.95054 1.22933 0.97539 0.86155 0.95462 1.87909 1.32128 1.31806 1.79601 1.22912 0.84159 1.04428 0.90925 1.22921 1.02741 0.95999 0.99373 1.22029 0.94045 0.96658 0.82674 0.91281 1.86678 1.37335 1.92750 1.21882 0.91600 0.89802 0.91223 0.91116 0.85564 0.86270 0.91317 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.48 13.96 21.61 0.30 -61.18 15 2 C -0.01 -0.90 5.49 84.82 0.47 -0.44 15 3 Si 0.98 48.97 28.62 68.60 1.96 50.93 15 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 6 H -0.27 -13.25 7.11 99.48 0.71 -12.54 15 7 C -0.36 -22.32 10.24 67.91 0.70 -21.62 15 8 H 0.04 2.95 7.88 -2.91 -0.02 2.93 15 9 O -0.33 -17.90 8.21 -75.88 -0.62 -18.52 15 10 C 0.07 3.05 2.52 30.69 0.08 3.13 15 11 H 0.03 1.54 7.80 -2.39 -0.02 1.53 15 12 C 0.06 2.14 6.47 72.01 0.47 2.60 15 13 O -0.40 -12.83 10.77 -148.98 -1.60 -14.44 15 14 C 0.05 1.15 6.84 72.02 0.49 1.64 15 15 C -0.17 -4.01 5.77 30.68 0.18 -3.84 15 16 C 0.10 3.51 3.23 30.71 0.10 3.61 15 17 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 18 O -0.58 -20.58 13.27 -142.94 -1.90 -22.48 15 19 H 0.27 16.39 8.31 -92.71 -0.77 15.62 15 20 H 0.08 3.46 8.14 -2.39 -0.02 3.44 15 21 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.13 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.12 1.77 8.14 -2.39 -0.02 1.75 15 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 26 H 0.39 8.67 9.09 -74.05 -0.67 8.00 15 Total: -1.00 -75.88 226.78 1.11 -74.76 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.50 Total: 5.83 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 2.47 Total: -14.91 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.30 Total: -61.18 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -4.12 Total: -55.44 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.96 Total: 50.93 kcal Total: -75.88 1.11 -74.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606246791.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.731 kcal (2) G-P(sol) polarization free energy of solvation -75.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds