Wall clock time and date at job start Mon Mar 30 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48493 * 109.47369 * 270.00465 * 3 2 1 5 5 H 1.48501 * 109.47143 * 30.00433 * 3 2 1 6 6 H 1.48499 * 109.46663 * 150.00346 * 3 2 1 7 7 C 1.38632 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00429 * 179.97438 * 7 2 1 9 9 O 1.34928 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.42901 * 117.00134 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.52229 * 29.87747 * 10 9 7 12 12 C 1.53087 * 109.52386 * 269.68718 * 10 9 7 13 13 O 1.42905 * 109.41504 * 182.48844 * 12 10 9 14 14 C 1.42905 * 114.09831 * 61.15479 * 13 12 10 15 15 C 1.53090 * 109.41466 * 298.84306 * 14 13 12 16 16 C 1.53181 * 109.16481 * 57.61337 * 15 14 13 17 17 H 1.08995 * 109.54695 * 183.15097 * 16 15 14 18 18 O 1.42895 * 109.54426 * 62.96705 * 16 15 14 19 19 H 0.97002 * 119.99644 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.48330 * 62.50381 * 12 10 9 21 21 H 1.09001 * 109.48123 * 302.46776 * 12 10 9 22 22 H 1.08998 * 109.47767 * 58.82768 * 14 13 12 23 23 H 1.09004 * 109.47562 * 178.86126 * 14 13 12 24 24 H 1.09007 * 109.51738 * 177.51413 * 15 14 13 25 25 H 1.08997 * 109.52670 * 297.63889 * 15 14 13 26 26 H 0.96707 * 114.00020 * 60.00522 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5474 1.4400 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2007 -0.0010 9 8 1.3343 -2.3691 -0.0005 10 6 2.1126 -3.5676 -0.0017 11 1 3.0584 -3.3882 0.5094 12 6 2.3835 -4.0003 -1.4449 13 8 3.1121 -5.2297 -1.4434 14 6 2.4216 -6.3164 -0.8233 15 6 2.1523 -5.9767 0.6449 16 6 1.3432 -4.6781 0.7204 17 1 1.1958 -4.4005 1.7640 18 8 0.0738 -4.8686 0.0924 19 1 -0.4850 0.8401 0.0004 20 1 2.9679 -3.2321 -1.9512 21 1 1.4366 -4.1397 -1.9665 22 1 1.4752 -6.4860 -1.3368 23 1 3.0336 -7.2166 -0.8818 24 1 1.5870 -6.7855 1.1081 25 1 3.0994 -5.8478 1.1687 26 1 -0.4644 -5.5632 0.4961 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606246792.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:09 Heat of formation + Delta-G solvation = -160.012288 kcal Electronic energy + Delta-G solvation = -12168.971607 eV Core-core repulsion = 9826.213368 eV Total energy + Delta-G solvation = -2342.758238 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.088 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.73418 -37.92798 -37.22802 -33.98711 -32.57652 -30.91443 -26.81205 -25.74805 -24.08776 -21.26249 -19.68262 -18.02583 -17.89385 -17.09377 -16.84222 -16.02709 -15.87122 -15.38923 -14.78772 -14.19954 -13.68490 -13.61900 -13.17724 -12.83918 -12.77962 -12.33178 -12.12453 -11.83302 -11.53362 -11.13244 -11.03594 -10.49948 -9.98563 -8.18104 -5.88940 1.38995 1.46003 1.55057 2.30589 2.85637 3.12517 3.37936 3.58000 3.79346 4.00396 4.03608 4.21215 4.35960 4.52500 4.71373 4.74995 4.80787 4.98293 5.06268 5.20157 5.22603 6.16187 6.21025 6.97799 7.23916 8.03266 9.06262 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.066546 B = 0.011177 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.661164 B = 2504.638001 C = 2718.832510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.041 4.041 3 Si 1.006 2.994 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.384 4.384 8 H 0.073 0.927 9 O -0.311 6.311 10 C 0.060 3.940 11 H 0.056 0.944 12 C 0.060 3.940 13 O -0.396 6.396 14 C 0.054 3.946 15 C -0.171 4.171 16 C 0.106 3.894 17 H 0.052 0.948 18 O -0.570 6.570 19 H 0.261 0.739 20 H 0.080 0.920 21 H 0.042 0.958 22 H 0.054 0.946 23 H 0.125 0.875 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 -11.284 1.435 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.235 4.235 3 Si 0.828 3.172 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.462 4.462 8 H 0.091 0.909 9 O -0.227 6.227 10 C 0.001 3.999 11 H 0.074 0.926 12 C -0.017 4.017 13 O -0.315 6.315 14 C -0.022 4.022 15 C -0.209 4.209 16 C 0.047 3.953 17 H 0.070 0.930 18 O -0.378 6.378 19 H 0.069 0.931 20 H 0.098 0.902 21 H 0.061 0.939 22 H 0.072 0.928 23 H 0.143 0.857 24 H 0.133 0.867 25 H 0.105 0.895 26 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.048 -10.743 0.983 11.910 hybrid contribution -0.146 0.489 0.456 0.685 sum 4.902 -10.253 1.440 11.456 Atomic orbital electron populations 1.70231 1.07663 1.27215 1.53138 1.26254 0.96731 1.02057 0.98424 0.84753 0.77649 0.76121 0.78678 1.19554 1.20303 1.18174 1.21457 0.90818 0.83672 1.50294 0.90926 1.85751 1.32889 1.11198 1.92853 1.22704 0.94020 0.87136 0.96038 0.92629 1.22809 0.95879 0.85879 0.97171 1.87839 1.44940 1.18901 1.79829 1.22800 0.98022 0.89589 0.91782 1.22863 1.01976 0.97167 0.98862 1.21952 0.84080 0.94007 0.95270 0.92959 1.86677 1.29619 1.61360 1.60119 0.93062 0.90189 0.93931 0.92807 0.85743 0.86681 0.89526 0.76380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.39 13.68 21.61 0.30 -61.09 15 2 C -0.04 -2.50 5.49 84.82 0.47 -2.03 15 3 Si 1.01 45.92 29.55 68.60 2.03 47.95 15 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.38 -23.25 9.78 67.91 0.66 -22.58 15 8 H 0.07 4.09 7.64 -2.91 -0.02 4.07 15 9 O -0.31 -18.81 9.28 -70.96 -0.66 -19.46 15 10 C 0.06 2.79 2.63 30.69 0.08 2.87 15 11 H 0.06 2.53 7.80 -2.39 -0.02 2.51 15 12 C 0.06 2.58 6.32 72.01 0.46 3.03 15 13 O -0.40 -14.25 10.77 -148.98 -1.60 -15.85 15 14 C 0.05 1.44 6.69 72.01 0.48 1.92 15 15 C -0.17 -4.30 5.83 30.68 0.18 -4.12 15 16 C 0.11 3.90 3.51 30.72 0.11 4.01 15 17 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 18 O -0.57 -21.61 12.14 -137.96 -1.67 -23.28 15 19 H 0.26 15.82 8.31 -92.71 -0.77 15.05 15 20 H 0.08 3.55 8.14 -2.39 -0.02 3.53 15 21 H 0.04 1.95 7.82 -2.39 -0.02 1.93 15 22 H 0.05 1.45 7.82 -2.39 -0.02 1.43 15 23 H 0.12 2.40 8.14 -2.38 -0.02 2.38 15 24 H 0.11 1.99 8.14 -2.38 -0.02 1.97 15 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.39 9.71 9.08 -74.05 -0.67 9.03 15 Total: -1.00 -76.98 226.18 1.32 -75.65 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.50 Total: 12.99 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 2.44 Total: -16.90 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.30 Total: -61.09 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -3.94 Total: -58.60 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.98 1.32 -75.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606246792.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.358 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds