Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86794 * 119.99629 * 2 1 4 4 H 1.48505 * 109.47324 * 270.00333 * 3 2 1 5 5 H 1.48496 * 109.47369 * 30.00560 * 3 2 1 6 6 H 1.48506 * 109.46990 * 150.00505 * 3 2 1 7 7 C 1.38636 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99862 * 359.97438 * 7 2 1 9 9 O 1.34923 * 119.99966 * 179.97438 * 7 2 1 10 10 C 1.42901 * 116.99867 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.52408 * 29.86816 * 10 9 7 12 12 C 1.53098 * 109.51848 * 269.68000 * 10 9 7 13 13 O 1.42901 * 109.41259 * 182.48593 * 12 10 9 14 14 C 1.42906 * 114.09911 * 61.16308 * 13 12 10 15 15 C 1.53092 * 109.41064 * 298.83587 * 14 13 12 16 16 C 1.53172 * 109.52594 * 149.99956 * 10 9 7 17 17 H 1.09000 * 109.54353 * 56.92133 * 16 10 9 18 18 O 1.42903 * 109.54245 * 296.75235 * 16 10 9 19 19 H 0.96993 * 120.00164 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.48253 * 302.47034 * 12 10 9 21 21 H 1.09000 * 109.47926 * 62.49287 * 12 10 9 22 22 H 1.08998 * 109.48072 * 58.81910 * 14 13 12 23 23 H 1.09003 * 109.47782 * 178.84723 * 14 13 12 24 24 H 1.08997 * 109.52798 * 297.70811 * 15 14 13 25 25 H 1.08999 * 109.52187 * 177.51459 * 15 14 13 26 26 H 0.96700 * 114.00311 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5474 1.4402 0.7000 7 6 2.0091 -1.2006 -0.0005 8 1 1.4691 -2.1359 -0.0005 9 8 3.3583 -1.2005 -0.0011 10 6 4.0071 -2.4738 -0.0022 11 1 3.3785 -3.2025 -0.5140 12 6 4.2471 -2.9269 1.4404 13 8 4.9474 -4.1725 1.4368 14 6 6.2335 -4.1170 0.8163 15 6 6.0733 -3.7118 -0.6513 16 6 5.3532 -2.3618 -0.7244 17 1 5.9620 -1.5958 -0.2443 18 8 5.1340 -2.0104 -2.0921 19 1 -0.4850 0.8400 0.0004 20 1 4.8414 -2.1772 1.9628 21 1 3.2897 -3.0493 1.9470 22 1 6.8538 -3.3829 1.3305 23 1 6.7072 -5.0971 0.8733 24 1 5.4869 -4.4662 -1.1757 25 1 7.0561 -3.6260 -1.1148 26 1 5.9455 -1.9227 -2.6106 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606246793.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = -160.507488 kcal Electronic energy + Delta-G solvation = -12142.599368 eV Core-core repulsion = 9799.819657 eV Total energy + Delta-G solvation = -2342.779712 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 188.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.75149 -38.15871 -37.48103 -34.18831 -32.71688 -31.18131 -26.73883 -25.45705 -24.02028 -21.51831 -19.82524 -18.47989 -18.08799 -17.16252 -16.76322 -16.09824 -15.63560 -15.31713 -14.63023 -14.47080 -14.19751 -13.86437 -13.55052 -13.05657 -12.63676 -12.31422 -11.99357 -11.74741 -11.63574 -11.30250 -10.90712 -10.77177 -10.28684 -8.29390 -6.00047 1.35529 1.41048 1.57650 2.41904 2.73232 3.02288 3.13093 3.40164 3.73651 3.87013 4.05826 4.15409 4.16763 4.54134 4.57763 4.71768 4.78623 4.84476 5.02696 5.17038 5.52638 6.04960 6.19097 6.94468 7.08729 7.73062 8.86676 Molecular weight = 188.09amu Principal moments of inertia in cm(-1) A = 0.053452 B = 0.012658 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.712911 B = 2211.591385 C = 2432.340401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.015 4.015 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.357 4.357 8 H 0.044 0.956 9 O -0.327 6.327 10 C 0.069 3.931 11 H 0.032 0.968 12 C 0.057 3.943 13 O -0.395 6.395 14 C 0.052 3.948 15 C -0.173 4.173 16 C 0.105 3.895 17 H 0.069 0.931 18 O -0.578 6.578 19 H 0.275 0.725 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.127 0.873 24 H 0.068 0.932 25 H 0.119 0.881 26 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.216 -5.052 0.227 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.208 4.208 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.436 4.436 8 H 0.062 0.938 9 O -0.242 6.242 10 C 0.010 3.990 11 H 0.050 0.950 12 C -0.021 4.021 13 O -0.314 6.314 14 C -0.024 4.024 15 C -0.210 4.210 16 C 0.046 3.954 17 H 0.087 0.913 18 O -0.386 6.386 19 H 0.084 0.916 20 H 0.087 0.913 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.144 0.856 24 H 0.087 0.913 25 H 0.137 0.863 26 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 15.521 -4.979 0.502 16.308 hybrid contribution 0.102 0.545 -0.426 0.699 sum 15.623 -4.435 0.076 16.241 Atomic orbital electron populations 1.69800 1.06952 1.28534 1.54740 1.25223 0.95839 1.02069 0.97633 0.85069 0.78577 0.77553 0.78471 1.20192 1.20145 1.18465 1.20369 0.79790 0.94097 1.49338 0.93786 1.85202 1.18734 1.26788 1.93524 1.22687 0.93738 0.86643 0.95921 0.94999 1.22929 0.97504 0.86139 0.95509 1.87909 1.32215 1.31813 1.79505 1.22912 0.84182 1.04423 0.90922 1.22920 1.02747 0.96021 0.99346 1.22025 0.94015 0.96673 0.82685 0.91279 1.86675 1.37385 1.92753 1.21805 0.91597 0.91334 0.89804 0.91155 0.85556 0.91295 0.86252 0.75837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.47 13.96 21.61 0.30 -61.17 15 2 C -0.01 -0.90 5.49 84.83 0.47 -0.44 15 3 Si 0.98 49.06 28.61 68.60 1.96 51.02 15 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 15 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.26 -12.65 7.11 99.48 0.71 -11.94 15 7 C -0.36 -22.30 10.24 67.92 0.70 -21.61 15 8 H 0.04 2.97 7.88 -2.91 -0.02 2.94 15 9 O -0.33 -17.90 8.21 -75.95 -0.62 -18.52 15 10 C 0.07 3.05 2.52 30.68 0.08 3.13 15 11 H 0.03 1.57 7.80 -2.39 -0.02 1.55 15 12 C 0.06 2.15 6.47 72.01 0.47 2.61 15 13 O -0.40 -12.86 10.77 -148.98 -1.60 -14.46 15 14 C 0.05 1.15 6.84 72.01 0.49 1.64 15 15 C -0.17 -4.00 5.77 30.68 0.18 -3.82 15 16 C 0.11 3.50 3.23 30.71 0.10 3.60 15 17 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 18 O -0.58 -20.37 13.27 -143.00 -1.90 -22.27 15 19 H 0.27 16.39 8.31 -92.71 -0.77 15.62 15 20 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 21 H 0.08 3.47 8.14 -2.39 -0.02 3.45 15 22 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.13 2.03 8.14 -2.39 -0.02 2.01 15 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.12 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.39 8.54 9.09 -74.06 -0.67 7.87 15 Total: -1.00 -75.73 226.78 1.11 -74.61 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.50 Total: 5.67 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 2.47 Total: -14.89 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.30 Total: -61.17 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -4.13 Total: -55.25 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.96 Total: 51.02 kcal Total: -75.73 1.11 -74.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606246793.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.894 kcal (2) G-P(sol) polarization free energy of solvation -75.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds