Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48496 * 109.46961 * 239.99460 * 3 2 1 5 5 H 1.48502 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47107 * 119.99360 * 3 2 1 7 7 C 1.37875 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00185 * 175.02976 * 7 2 1 9 9 C 1.50696 * 120.00099 * 355.02421 * 7 2 1 10 10 C 1.53000 * 115.55092 * 279.50327 * 9 7 2 11 11 S 1.81403 * 109.47252 * 320.09134 * 10 9 7 12 12 N 1.65601 * 102.99854 * 184.86981 * 11 10 9 13 13 O 1.42100 * 109.46878 * 293.93011 * 11 10 9 14 14 C 1.52998 * 117.49875 * 65.17603 * 9 7 2 15 15 C 1.52987 * 60.03395 * 107.50026 * 14 9 7 16 16 H 0.97002 * 120.00013 * 5.00925 * 1 2 3 17 17 H 1.09001 * 109.47404 * 80.09369 * 10 9 7 18 18 H 1.09004 * 109.46863 * 200.09474 * 10 9 7 19 19 H 0.97003 * 119.99119 * 149.99984 * 12 11 10 20 20 H 0.96997 * 120.00080 * 330.00279 * 12 11 10 21 21 H 1.09006 * 117.49972 * 215.00637 * 14 9 7 22 22 H 1.09003 * 117.49821 * 359.97438 * 14 9 7 23 23 H 1.09002 * 117.49995 * 107.50233 * 15 14 9 24 24 H 1.09006 * 117.50060 * 252.52216 * 15 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1959 -0.0805 9 6 1.2553 -2.4966 0.1143 10 6 0.8325 -2.8932 1.5302 11 16 2.1640 -2.4898 2.6943 12 7 1.6030 -3.0999 4.1279 13 8 3.2953 -3.3050 2.4207 14 6 0.3191 -2.8758 -1.0348 15 6 1.6421 -3.6213 -0.8493 16 1 -0.4850 0.8369 -0.0734 17 1 -0.0695 -2.3471 1.8065 18 1 0.6332 -3.9643 1.5633 19 1 2.2286 -3.4183 4.7974 20 1 0.6489 -3.1388 4.2982 21 1 -0.5982 -3.4077 -0.7821 22 1 0.2447 -2.1828 -1.8730 23 1 1.5953 -4.6438 -0.4745 24 1 2.4386 -3.4188 -1.5653 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675070560.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = -24.996293 kcal Electronic energy + Delta-G solvation = -10148.167998 eV Core-core repulsion = 8188.591453 eV Total energy + Delta-G solvation = -1959.576545 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 189.056 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.46796 -34.65010 -32.04396 -31.76037 -27.56926 -25.35361 -21.02483 -19.31480 -17.40121 -16.48730 -15.63131 -14.91113 -14.62329 -13.82630 -13.49771 -12.92241 -12.20950 -11.65182 -11.42110 -10.94360 -10.88535 -10.50071 -10.17537 -9.91233 -9.47695 -9.41531 -8.92990 -8.49285 -8.02718 -6.92510 -6.10642 -4.23259 3.01308 3.29046 3.34362 3.38034 3.75907 4.34693 4.88029 5.16723 5.40859 6.06788 6.29789 6.55441 6.63865 6.81976 6.85078 6.95064 7.14555 7.40636 7.55397 7.81811 8.02057 8.37810 8.84598 9.45732 10.95828 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.035474 B = 0.018288 C = 0.014528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.129687 B = 1530.702369 C = 1926.873221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.081 3.919 3 Si 0.884 3.116 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.065 3.935 10 C -0.421 4.421 11 S 1.512 4.488 12 N -1.173 6.173 13 O -0.914 6.914 14 C -0.153 4.153 15 C -0.212 4.212 16 H 0.264 0.736 17 H 0.107 0.893 18 H 0.050 0.950 19 H 0.387 0.613 20 H 0.390 0.610 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.060 0.940 24 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 0.433 5.529 5.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.124 4.124 3 Si 0.711 3.289 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.063 3.937 10 C -0.559 4.559 11 S 1.613 4.387 12 N -0.829 5.829 13 O -0.899 6.899 14 C -0.192 4.192 15 C -0.249 4.249 16 H 0.074 0.926 17 H 0.125 0.875 18 H 0.069 0.931 19 H 0.210 0.790 20 H 0.213 0.787 21 H 0.077 0.923 22 H 0.101 0.899 23 H 0.078 0.922 24 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.165 0.999 5.365 5.460 hybrid contribution -0.395 -1.525 -0.216 1.590 sum -0.229 -0.527 5.149 5.181 Atomic orbital electron populations 1.69999 1.05972 1.27192 1.47214 1.25003 0.94783 0.98880 0.93774 0.86769 0.79927 0.82810 0.79432 1.20109 1.21001 1.19139 1.20563 0.93198 0.88635 1.53381 0.91495 1.18207 0.98098 0.92649 0.84723 1.27598 1.14984 1.02822 1.10536 1.71178 0.79296 1.11084 0.77149 1.51626 1.14282 1.84977 1.32064 1.92844 1.44685 1.70534 1.81804 1.22536 0.91064 1.01970 1.03593 1.23026 0.99724 0.95749 1.06395 0.92605 0.87450 0.93122 0.78962 0.78739 0.92250 0.89869 0.92169 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.56 12.86 55.43 0.71 -21.85 14 2 C 0.08 2.05 5.44 -17.82 -0.10 1.95 14 3 Si 0.88 19.25 29.54 -169.99 -5.02 14.23 14 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 14 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 14 6 H -0.27 -5.53 7.11 56.52 0.40 -5.12 14 7 C -0.52 -13.48 7.53 -34.44 -0.26 -13.74 14 8 H 0.07 1.77 7.82 -52.49 -0.41 1.36 14 9 C 0.07 1.63 1.66 -155.63 -0.26 1.38 14 10 C -0.42 -9.32 6.19 37.16 0.23 -9.09 14 11 S 1.51 30.20 13.48 -107.50 -1.45 28.76 14 12 N -1.17 -18.31 9.35 60.35 0.56 -17.75 14 13 O -0.91 -23.33 18.05 -35.23 -0.64 -23.96 14 14 C -0.15 -3.71 9.43 -26.74 -0.25 -3.96 14 15 C -0.21 -5.11 9.89 -26.70 -0.26 -5.37 14 16 H 0.26 6.53 8.32 -40.82 -0.34 6.19 14 17 H 0.11 2.29 8.14 -51.92 -0.42 1.87 14 18 H 0.05 1.11 7.95 -51.92 -0.41 0.69 14 19 H 0.39 5.62 8.96 -34.46 -0.31 5.31 14 20 H 0.39 5.18 8.93 -34.47 -0.31 4.88 14 21 H 0.06 1.36 8.14 -51.93 -0.42 0.94 14 22 H 0.08 2.10 8.14 -51.93 -0.42 1.68 14 23 H 0.06 1.39 8.09 -51.93 -0.42 0.97 14 24 H 0.08 1.86 8.14 -51.93 -0.42 1.44 14 LS Contribution 227.36 15.07 3.43 3.43 Total: -1.00 -31.24 227.36 -5.99 -37.23 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -2.69 Total: 8.76 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -0.90 Total: -28.84 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 1.28 Total: -39.60 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.64 Total: -23.96 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 16 Polarization: 30.20 SS G_CDS: -1.45 Total: 28.76 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.24 -5.99 -37.23 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675070560.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.237 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds