Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48498 * 109.47315 * 269.99972 * 3 2 1 5 5 H 1.48496 * 109.47174 * 30.00402 * 3 2 1 6 6 H 1.48496 * 109.47128 * 150.00067 * 3 2 1 7 7 C 1.37876 * 120.00426 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99658 * 172.61653 * 7 2 1 9 9 C 1.50697 * 120.00096 * 352.62062 * 7 2 1 10 10 C 1.52999 * 115.56405 * 80.68625 * 9 7 2 11 11 S 1.81408 * 109.46691 * 39.58584 * 10 9 7 12 12 N 1.65605 * 102.99638 * 185.77175 * 11 10 9 13 13 O 1.42105 * 109.46759 * 76.71895 * 11 10 9 14 14 C 1.52999 * 117.49749 * 226.38301 * 9 7 2 15 15 C 1.53002 * 117.49451 * 295.00411 * 9 7 2 16 16 H 0.96998 * 120.00599 * 5.03619 * 1 2 3 17 17 H 1.09005 * 109.47067 * 159.57812 * 10 9 7 18 18 H 1.08996 * 109.47296 * 279.58557 * 10 9 7 19 19 H 0.97001 * 119.99793 * 150.00106 * 12 11 10 20 20 H 0.96996 * 120.00362 * 330.00203 * 12 11 10 21 21 H 1.09004 * 117.49875 * 214.97561 * 14 9 7 22 22 H 1.09001 * 117.50041 * 359.97438 * 14 9 7 23 23 H 1.08994 * 117.50359 * 359.97438 * 15 9 7 24 24 H 1.09006 * 117.49779 * 145.00088 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0779 -1.1977 -0.1207 9 6 1.2606 -2.4938 0.1665 10 6 0.5905 -3.0380 -1.0967 11 16 1.6790 -2.7681 -2.5226 12 7 0.7469 -3.2583 -3.8007 13 8 2.7280 -3.7267 -2.5058 14 6 1.8286 -3.5104 1.1589 15 6 0.5539 -2.7366 1.5016 16 1 -0.4851 0.8367 -0.0737 17 1 0.4048 -4.1056 -0.9783 18 1 -0.3550 -2.5204 -1.2582 19 1 0.8667 -2.8508 -4.6727 20 1 0.0812 -3.9529 -3.6773 21 1 1.7249 -4.5670 0.9118 22 1 2.7406 -3.2392 1.6906 23 1 0.6274 -1.9565 2.2593 24 1 -0.3886 -3.2839 1.4800 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675070563.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = -24.271338 kcal Electronic energy + Delta-G solvation = -10132.639258 eV Core-core repulsion = 8173.094149 eV Total energy + Delta-G solvation = -1959.545109 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 189.056 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -36.52808 -34.54403 -32.06989 -31.71915 -27.60377 -25.39492 -21.10047 -19.37308 -17.37662 -16.43443 -15.75980 -14.93492 -14.64337 -13.94676 -13.18172 -12.96420 -12.36160 -11.69744 -11.39822 -10.98886 -10.87934 -10.50898 -10.20925 -9.94104 -9.60378 -9.10850 -8.75248 -8.53712 -8.04120 -7.12218 -6.14008 -4.25217 2.94058 3.25958 3.34501 3.39416 3.73864 4.32935 5.05921 5.15768 5.37334 6.02320 6.26704 6.51543 6.58766 6.77892 6.85109 6.94234 7.08564 7.38143 7.46055 7.78379 8.02378 8.33052 8.81759 9.43946 10.93361 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.017667 C = 0.014378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.288270 B = 1584.460719 C = 1946.971076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.082 3.918 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.068 0.932 9 C 0.066 3.934 10 C -0.405 4.405 11 S 1.504 4.496 12 N -1.171 6.171 13 O -0.925 6.925 14 C -0.212 4.212 15 C -0.158 4.158 16 H 0.264 0.736 17 H 0.048 0.952 18 H 0.114 0.886 19 H 0.396 0.604 20 H 0.374 0.626 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 0.571 -4.190 4.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.544 4.544 11 S 1.606 4.394 12 N -0.829 5.829 13 O -0.910 6.910 14 C -0.249 4.249 15 C -0.197 4.197 16 H 0.074 0.926 17 H 0.067 0.933 18 H 0.132 0.868 19 H 0.222 0.778 20 H 0.194 0.806 21 H 0.080 0.920 22 H 0.098 0.902 23 H 0.100 0.900 24 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.260 1.012 -4.108 4.238 hybrid contribution -0.700 -1.381 0.273 1.572 sum -0.959 -0.369 -3.835 3.970 Atomic orbital electron populations 1.69985 1.06026 1.27223 1.47098 1.24990 0.94754 0.98916 0.93675 0.86663 0.80180 0.83065 0.78766 1.19807 1.21096 1.19574 1.20566 0.93607 0.88664 1.52989 0.91355 1.18212 0.96950 0.93396 0.85022 1.27427 1.11848 1.02025 1.13083 1.69805 0.77476 1.12503 0.79580 1.51197 1.53978 1.53315 1.24451 1.92828 1.48318 1.66499 1.83316 1.23051 0.97882 0.95657 1.08299 1.22585 0.93017 1.01466 1.02613 0.92590 0.93308 0.86789 0.77802 0.80552 0.91960 0.90162 0.89999 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.13 13.14 55.43 0.73 -21.40 14 2 C 0.08 2.04 5.41 -17.82 -0.10 1.94 14 3 Si 0.89 19.06 29.55 -169.99 -5.02 14.04 14 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 14 5 H -0.29 -6.19 7.11 56.52 0.40 -5.79 14 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 14 7 C -0.52 -13.15 7.51 -34.44 -0.26 -13.41 14 8 H 0.07 1.74 7.82 -52.48 -0.41 1.33 14 9 C 0.07 1.63 1.57 -155.66 -0.24 1.38 14 10 C -0.41 -9.01 6.20 37.16 0.23 -8.78 14 11 S 1.50 30.61 13.47 -107.50 -1.45 29.16 14 12 N -1.17 -19.05 9.35 60.35 0.56 -18.48 14 13 O -0.93 -23.93 18.05 -35.23 -0.64 -24.57 14 14 C -0.21 -4.96 9.88 -26.73 -0.26 -5.22 14 15 C -0.16 -3.74 9.74 -26.73 -0.26 -4.00 14 16 H 0.26 6.39 8.32 -40.82 -0.34 6.05 14 17 H 0.05 1.07 7.94 -51.92 -0.41 0.65 14 18 H 0.11 2.51 8.14 -51.93 -0.42 2.09 14 19 H 0.40 5.26 8.96 -34.47 -0.31 4.95 14 20 H 0.37 5.77 8.93 -34.48 -0.31 5.46 14 21 H 0.06 1.40 8.08 -51.93 -0.42 0.98 14 22 H 0.08 1.83 8.14 -51.93 -0.42 1.41 14 23 H 0.08 1.99 8.14 -51.93 -0.42 1.57 14 24 H 0.06 1.38 8.14 -51.93 -0.42 0.96 14 LS Contribution 227.82 15.07 3.43 3.43 Total: -1.00 -30.98 227.82 -5.96 -36.94 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -2.69 Total: 8.96 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -0.89 Total: -28.08 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 1.29 Total: -39.88 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.64 Total: -24.57 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 30.61 SS G_CDS: -1.45 Total: 29.16 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.98 -5.96 -36.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675070563.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.668 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds