Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99581 * 2 1 4 4 H 1.48498 * 109.47315 * 269.99972 * 3 2 1 5 5 H 1.48496 * 109.47174 * 30.00402 * 3 2 1 6 6 H 1.48496 * 109.47128 * 150.00067 * 3 2 1 7 7 C 1.37876 * 120.00426 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99658 * 172.61653 * 7 2 1 9 9 C 1.50697 * 120.00096 * 352.62062 * 7 2 1 10 10 C 1.52999 * 115.56405 * 80.68625 * 9 7 2 11 11 S 1.81408 * 109.46691 * 39.58584 * 10 9 7 12 12 N 1.65605 * 102.99638 * 185.77175 * 11 10 9 13 13 O 1.42105 * 109.46759 * 76.71895 * 11 10 9 14 14 C 1.52999 * 117.49749 * 226.38301 * 9 7 2 15 15 C 1.53002 * 117.49451 * 295.00411 * 9 7 2 16 16 H 0.96998 * 120.00599 * 5.03619 * 1 2 3 17 17 H 1.09005 * 109.47067 * 159.57812 * 10 9 7 18 18 H 1.08996 * 109.47296 * 279.58557 * 10 9 7 19 19 H 0.97001 * 119.99793 * 150.00106 * 12 11 10 20 20 H 0.96996 * 120.00362 * 330.00203 * 12 11 10 21 21 H 1.09004 * 117.49875 * 214.97561 * 14 9 7 22 22 H 1.09001 * 117.50041 * 359.97438 * 14 9 7 23 23 H 1.08994 * 117.50359 * 359.97438 * 15 9 7 24 24 H 1.09006 * 117.49779 * 145.00088 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0779 -1.1977 -0.1207 9 6 1.2606 -2.4938 0.1665 10 6 0.5905 -3.0380 -1.0967 11 16 1.6790 -2.7681 -2.5226 12 7 0.7469 -3.2583 -3.8007 13 8 2.7280 -3.7267 -2.5058 14 6 1.8286 -3.5104 1.1589 15 6 0.5539 -2.7366 1.5016 16 1 -0.4851 0.8367 -0.0737 17 1 0.4048 -4.1056 -0.9783 18 1 -0.3550 -2.5204 -1.2582 19 1 0.8667 -2.8508 -4.6727 20 1 0.0812 -3.9529 -3.6773 21 1 1.7249 -4.5670 0.9118 22 1 2.7406 -3.2392 1.6906 23 1 0.6274 -1.9565 2.2593 24 1 -0.3886 -3.2839 1.4800 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675070563.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = -47.318935 kcal Electronic energy + Delta-G solvation = -10133.638676 eV Core-core repulsion = 8173.094149 eV Total energy + Delta-G solvation = -1960.544528 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 189.056 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.39100 -36.39411 -33.97184 -33.16673 -29.40507 -27.30495 -22.98054 -21.22823 -19.03359 -18.11363 -17.41017 -16.63918 -16.45417 -15.74176 -14.96589 -14.72039 -14.14878 -13.53092 -13.23800 -12.74810 -12.65489 -12.27156 -12.06750 -11.77543 -11.40338 -10.83768 -10.49621 -10.35398 -9.86625 -8.82378 -8.02413 -6.19954 1.29633 1.58569 1.62410 1.70394 2.16984 2.54591 3.24465 3.33537 3.53726 4.19383 4.43910 4.68391 4.75096 4.91770 5.04221 5.20987 5.53916 5.56102 5.62578 5.86644 6.42536 6.82079 6.88626 7.52175 9.05244 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.017667 C = 0.014378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.288270 B = 1584.460719 C = 1946.971076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.052 3.948 3 Si 0.940 3.060 4 H -0.253 1.253 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.044 3.956 10 C -0.405 4.405 11 S 1.541 4.459 12 N -1.158 6.158 13 O -0.981 6.981 14 C -0.211 4.211 15 C -0.156 4.156 16 H 0.268 0.732 17 H 0.047 0.953 18 H 0.115 0.885 19 H 0.414 0.586 20 H 0.384 0.616 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 1.174 -4.966 5.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.152 4.152 3 Si 0.764 3.236 4 H -0.177 1.177 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.042 3.958 10 C -0.543 4.543 11 S 1.642 4.358 12 N -0.821 5.821 13 O -0.965 6.965 14 C -0.248 4.248 15 C -0.195 4.195 16 H 0.077 0.923 17 H 0.066 0.934 18 H 0.133 0.867 19 H 0.243 0.757 20 H 0.205 0.795 21 H 0.087 0.913 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.478 1.610 -4.899 5.179 hybrid contribution -0.701 -1.593 0.491 1.808 sum -1.179 0.017 -4.409 4.564 Atomic orbital electron populations 1.70048 1.07007 1.28134 1.47292 1.25517 0.95369 1.01271 0.93044 0.85830 0.78569 0.79528 0.79632 1.17725 1.21293 1.20222 1.20652 0.93348 0.89512 1.53880 0.92178 1.18465 0.97550 0.93740 0.86066 1.27390 1.12026 1.01725 1.13110 1.69379 0.76277 1.11155 0.78994 1.50693 1.53276 1.53602 1.24517 1.92751 1.51222 1.68156 1.84371 1.23080 0.97793 0.95930 1.08017 1.22527 0.93558 1.01291 1.02127 0.92251 0.93443 0.86660 0.75667 0.79477 0.91251 0.90150 0.91192 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.34 13.14 21.45 0.28 -44.06 14 2 C 0.05 2.52 5.41 84.65 0.46 2.98 14 3 Si 0.94 37.97 29.55 68.60 2.03 40.00 14 4 H -0.25 -9.39 7.11 99.48 0.71 -8.69 14 5 H -0.29 -11.64 7.11 99.48 0.71 -10.94 14 6 H -0.28 -11.42 7.11 99.48 0.71 -10.71 14 7 C -0.54 -26.77 7.51 25.60 0.19 -26.58 14 8 H 0.06 3.04 7.82 -2.91 -0.02 3.02 14 9 C 0.04 2.12 1.57 -52.93 -0.08 2.04 14 10 C -0.40 -17.56 6.20 71.98 0.45 -17.12 14 11 S 1.54 60.68 13.47 -56.49 -0.76 59.92 14 12 N -1.16 -34.93 9.35 37.02 0.35 -34.58 14 13 O -0.98 -49.97 18.05 -148.98 -2.69 -52.66 14 14 C -0.21 -9.78 9.88 30.59 0.30 -9.47 14 15 C -0.16 -7.32 9.74 30.60 0.30 -7.02 14 16 H 0.27 12.61 8.32 -92.71 -0.77 11.84 14 17 H 0.05 2.02 7.94 -2.39 -0.02 2.00 14 18 H 0.12 4.93 8.14 -2.39 -0.02 4.91 14 19 H 0.41 9.83 8.96 -96.74 -0.87 8.96 14 20 H 0.38 10.85 8.93 -96.74 -0.86 9.99 14 21 H 0.07 3.07 8.08 -2.38 -0.02 3.05 14 22 H 0.08 3.66 8.14 -2.39 -0.02 3.64 14 23 H 0.07 3.40 8.14 -2.39 -0.02 3.38 14 24 H 0.07 3.14 8.14 -2.38 -0.02 3.12 14 Total: -1.00 -63.29 227.82 0.30 -62.99 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.52 Total: 23.56 kcal Atomic # 6 Polarization: -56.78 SS G_CDS: 1.61 Total: -55.17 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: 0.63 Total: -78.64 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -2.69 Total: -52.66 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 16 Polarization: 60.68 SS G_CDS: -0.76 Total: 59.92 kcal Total: -63.29 0.30 -62.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675070563.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.671 kcal (2) G-P(sol) polarization free energy of solvation -63.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds