Wall clock time and date at job start Mon Mar 30 2020 02:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42106 * 109.47203 * 2 1 4 4 N 1.65600 * 103.00213 * 250.94438 * 2 1 3 5 5 C 1.36936 * 120.00276 * 180.02562 * 4 2 1 6 6 H 1.08001 * 119.99624 * 203.88085 * 5 4 2 7 7 C 1.38815 * 119.99904 * 23.87646 * 5 4 2 8 8 N 1.31622 * 120.00026 * 13.40208 * 7 5 4 9 9 Si 1.86798 * 119.99715 * 193.39413 * 7 5 4 10 10 H 1.48502 * 109.46861 * 90.00523 * 9 7 5 11 11 H 1.48500 * 109.47126 * 210.00078 * 9 7 5 12 12 H 1.48495 * 109.47329 * 330.00251 * 9 7 5 13 13 C 1.46506 * 119.99763 * 359.72262 * 4 2 1 14 14 C 1.52999 * 117.49965 * 187.47390 * 13 4 2 15 15 C 1.52992 * 117.49715 * 118.85025 * 13 4 2 16 16 H 1.08998 * 109.47295 * 169.05622 * 1 2 3 17 17 H 1.09005 * 109.46961 * 289.05888 * 1 2 3 18 18 H 1.08995 * 109.46921 * 49.05522 * 1 2 3 19 19 H 0.96993 * 119.99713 * 174.94609 * 8 7 5 20 20 H 1.09004 * 115.54936 * 333.18117 * 13 4 2 21 21 H 1.08998 * 117.49812 * 0.02562 * 14 13 4 22 22 H 1.08997 * 117.49876 * 145.01904 * 14 13 4 23 23 H 1.09005 * 117.50109 * 214.97781 * 15 13 4 24 24 H 1.09000 * 117.50459 * 359.97438 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 7 2.1866 -0.5268 -1.5251 5 6 3.4961 -0.6580 -1.9034 6 1 3.7626 -0.6187 -2.9493 7 6 4.4810 -0.8415 -0.9425 8 7 4.1464 -1.1521 0.2919 9 14 6.2813 -0.6477 -1.4017 10 1 6.6948 0.7640 -1.1983 11 1 7.1089 -1.5342 -0.5447 12 1 6.4714 -1.0188 -2.8269 13 6 1.1151 -0.8588 -2.4675 14 6 1.5170 -1.5039 -3.7954 15 6 1.0395 -0.0507 -3.7644 16 1 -0.3634 -1.0089 -0.1951 17 1 -0.3633 0.3356 0.9714 18 1 -0.3633 0.6734 -0.7762 19 1 4.8349 -1.3522 0.9452 20 1 0.1748 -1.1770 -2.0172 21 1 2.5785 -1.6817 -3.9677 22 1 0.8411 -2.2469 -4.2189 23 1 0.0495 0.1625 -4.1676 24 1 1.7866 0.7283 -3.9164 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706829028.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:40 Heat of formation + Delta-G solvation = -4.272425 kcal Electronic energy + Delta-G solvation = -10356.623231 eV Core-core repulsion = 8397.945340 eV Total energy + Delta-G solvation = -1958.677891 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 189.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.06493 -34.04352 -33.24379 -30.20585 -27.86418 -24.58089 -21.60086 -20.30310 -18.33122 -16.00293 -15.41156 -14.66413 -14.01677 -13.58151 -12.99235 -12.77463 -12.23061 -11.67213 -11.34787 -11.13584 -11.02807 -10.82968 -10.43468 -10.29790 -10.09276 -9.74893 -8.95776 -8.89080 -7.76144 -6.71463 -5.93706 -3.73523 3.22950 3.34574 3.36335 3.50044 4.05390 4.39039 4.68875 5.17780 5.50856 5.66154 5.79909 5.88157 6.08083 6.21828 6.30749 6.38260 6.70409 6.79030 6.94027 7.44400 7.62981 8.49739 9.17843 9.59608 10.86894 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.038022 B = 0.020729 C = 0.015038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.229930 B = 1350.420050 C = 1861.563223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.583 4.583 2 S 1.592 4.408 3 O -0.929 6.929 4 N -0.740 5.740 5 C -0.251 4.251 6 H 0.078 0.922 7 C 0.003 3.997 8 N -0.929 5.929 9 Si 0.936 3.064 10 H -0.281 1.281 11 H -0.283 1.283 12 H -0.276 1.276 13 C 0.097 3.903 14 C -0.181 4.181 15 C -0.222 4.222 16 H 0.089 0.911 17 H 0.081 0.919 18 H 0.059 0.941 19 H 0.280 0.720 20 H 0.109 0.891 21 H 0.102 0.898 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -3.763 -1.273 5.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.732 4.732 2 S 1.688 4.312 3 O -0.912 6.912 4 N -0.564 5.564 5 C -0.383 4.383 6 H 0.096 0.904 7 C -0.194 4.194 8 N -0.578 5.578 9 Si 0.765 3.235 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.201 1.201 13 C -0.014 4.014 14 C -0.220 4.220 15 C -0.262 4.262 16 H 0.108 0.892 17 H 0.100 0.900 18 H 0.078 0.922 19 H 0.092 0.908 20 H 0.126 0.874 21 H 0.120 0.880 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.480 -3.379 -0.394 4.867 hybrid contribution -0.077 1.340 -1.805 2.250 sum -3.558 -2.039 -2.200 4.653 Atomic orbital electron populations 1.29017 1.35099 1.04750 1.04325 1.72796 0.76464 0.92602 0.89306 1.92709 1.73749 1.42811 1.81906 1.50379 1.06335 1.74352 1.25342 1.19159 0.81082 1.44011 0.94034 0.90401 1.25161 1.00485 0.97916 0.95869 1.68631 1.34199 1.51144 1.03843 0.85727 0.81778 0.78122 0.77903 1.20787 1.20829 1.20088 1.21543 0.93109 1.01339 0.85450 1.23064 1.02282 0.94507 1.02196 1.23357 1.01298 0.95190 1.06397 0.89187 0.90027 0.92197 0.90756 0.87367 0.87955 0.89996 0.90289 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.58 -11.43 9.13 101.05 0.92 -10.51 14 2 S 1.59 38.68 11.45 -107.50 -1.23 37.45 14 3 O -0.93 -28.17 17.95 -35.23 -0.63 -28.80 14 4 N -0.74 -18.64 3.21 -53.42 -0.17 -18.82 14 5 C -0.25 -6.80 8.74 -15.06 -0.13 -6.93 14 6 H 0.08 2.07 6.40 -52.49 -0.34 1.73 14 7 C 0.00 0.08 5.22 -17.43 -0.09 -0.01 14 8 N -0.93 -24.74 11.01 55.49 0.61 -24.13 14 9 Si 0.94 21.70 29.58 -169.99 -5.03 16.68 14 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 14 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 14 13 C 0.10 2.05 5.79 -67.93 -0.39 1.66 14 14 C -0.18 -3.43 9.76 -26.73 -0.26 -3.69 14 15 C -0.22 -4.37 10.29 -26.74 -0.28 -4.65 14 16 H 0.09 1.52 7.12 -51.93 -0.37 1.15 14 17 H 0.08 1.45 8.14 -51.92 -0.42 1.02 14 18 H 0.06 1.23 7.96 -51.93 -0.41 0.82 14 19 H 0.28 7.04 8.32 -40.82 -0.34 6.70 14 20 H 0.11 2.01 5.97 -51.93 -0.31 1.70 14 21 H 0.10 2.09 6.41 -51.93 -0.33 1.75 14 22 H 0.08 1.30 8.14 -51.93 -0.42 0.87 14 23 H 0.08 1.34 8.14 -51.93 -0.42 0.92 14 24 H 0.09 1.92 8.14 -51.93 -0.42 1.50 14 LS Contribution 218.19 15.07 3.29 3.29 Total: -1.00 -32.37 218.19 -5.98 -38.35 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -2.59 Total: 0.11 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: -0.23 Total: -24.13 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.44 Total: -42.94 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.63 Total: -28.80 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 16 Polarization: 38.68 SS G_CDS: -1.23 Total: 37.45 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -32.37 -5.98 -38.35 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706829028.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.073 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds