Wall clock time and date at job start Mon Mar 30 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30936 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48502 * 109.47271 * 270.27825 * 3 2 1 5 5 H 1.48505 * 109.46880 * 30.27305 * 3 2 1 6 6 H 1.48495 * 109.47179 * 150.27275 * 3 2 1 7 7 C 1.39775 * 120.00173 * 180.27600 * 2 1 3 8 8 H 1.07999 * 120.00143 * 179.72683 * 7 2 1 9 9 C 1.41095 * 119.99665 * 359.72420 * 7 2 1 10 10 C 1.39348 * 119.76141 * 179.72672 * 9 7 2 11 11 N 1.35902 * 119.39036 * 179.76491 * 10 9 7 12 12 C 1.36430 * 133.46595 * 180.16408 * 11 10 9 13 13 C 1.35406 * 107.06408 * 180.31125 * 12 11 10 14 14 N 1.33358 * 108.64488 * 0.02562 * 13 12 11 15 15 C 1.32237 * 109.26581 * 0.02562 * 14 13 12 16 16 C 1.41238 * 132.78205 * 180.02562 * 15 14 13 17 17 N 1.30810 * 120.25801 * 179.97438 * 16 15 14 18 18 H 0.97000 * 120.00257 * 359.72697 * 1 2 3 19 19 H 1.08001 * 120.29875 * 0.02562 * 10 9 7 20 20 H 1.07993 * 126.46901 * 0.33418 * 12 11 10 21 21 H 1.07998 * 125.68002 * 180.02562 * 13 12 11 22 22 H 1.08000 * 119.87330 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.4850 2.0499 -1.4001 5 1 1.4437 2.6510 0.7058 6 1 3.5438 1.4385 0.6942 7 6 2.0083 -1.2105 -0.0058 8 1 3.0883 -1.2104 -0.0103 9 6 1.3028 -2.4324 -0.0058 10 6 2.0045 -3.6362 -0.0174 11 7 1.3174 -4.8087 -0.0125 12 6 1.6971 -6.1191 -0.0177 13 6 0.5645 -6.8611 -0.0151 14 7 -0.4846 -6.0377 -0.0090 15 6 -0.0570 -4.7863 -0.0082 16 6 -0.7278 -3.5434 -0.0024 17 7 -0.0466 -2.4267 -0.0025 18 1 -0.4850 0.8400 0.0040 19 1 3.0844 -3.6374 -0.0260 20 1 2.7099 -6.4939 -0.0226 21 1 0.5182 -7.9401 -0.0175 22 1 -1.8074 -3.5148 0.0023 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709659582.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:34 Heat of formation + Delta-G solvation = 76.732744 kcal Electronic energy + Delta-G solvation = -10875.495627 eV Core-core repulsion = 8817.179183 eV Total energy + Delta-G solvation = -2058.316444 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.29726 -38.88194 -35.44699 -34.58896 -31.59704 -30.05740 -27.24920 -24.92473 -23.38927 -22.26765 -19.99478 -18.51057 -17.52881 -16.73152 -16.55962 -15.75141 -15.34979 -14.86189 -14.40780 -13.70463 -13.60530 -13.12274 -12.75531 -12.68640 -12.10183 -11.94943 -11.20003 -10.97651 -10.21780 -9.67602 -8.82275 -8.57284 -6.59595 0.15761 0.83784 1.40615 1.48198 1.56192 2.12683 2.18331 2.25094 2.66951 3.51140 3.61109 3.80435 4.04963 4.32946 4.58120 4.79927 4.97708 5.03898 5.18500 5.76367 5.95109 6.02890 6.10124 6.55528 6.66416 7.17139 7.56777 8.24473 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.093579 B = 0.010878 C = 0.009779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 299.139252 B = 2573.274767 C = 2862.570456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.022 3.978 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.253 1.253 7 C -0.438 4.438 8 H 0.103 0.897 9 C 0.200 3.800 10 C -0.243 4.243 11 N -0.288 5.288 12 C -0.139 4.139 13 C 0.004 3.996 14 N -0.516 5.516 15 C 0.066 3.934 16 C 0.167 3.833 17 N -0.439 5.439 18 H 0.289 0.711 19 H 0.151 0.849 20 H 0.200 0.800 21 H 0.209 0.791 22 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 -1.203 0.000 3.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.201 4.201 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.176 1.176 7 C -0.466 4.466 8 H 0.121 0.879 9 C 0.086 3.914 10 C -0.371 4.371 11 N 0.045 4.955 12 C -0.277 4.277 13 C -0.155 4.155 14 N -0.239 5.239 15 C -0.177 4.177 16 C -0.021 4.021 17 N -0.150 5.150 18 H 0.100 0.900 19 H 0.168 0.832 20 H 0.217 0.783 21 H 0.226 0.774 22 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.230 -0.254 0.010 2.245 hybrid contribution 1.519 -0.122 -0.012 1.524 sum 3.749 -0.377 -0.003 3.768 Atomic orbital electron populations 1.70209 1.08953 1.30389 1.27546 1.27111 0.95912 1.04979 0.92104 0.84947 0.78906 0.74698 0.79685 1.18508 1.18978 1.17601 1.19818 0.95506 0.89261 1.41982 0.87928 1.18650 0.87795 0.92657 0.92274 1.22058 0.97611 0.82699 1.34780 1.42331 1.08424 1.06696 1.38059 1.23063 1.02727 0.80543 1.21402 1.22924 0.86949 1.00752 1.04860 1.70242 1.31956 0.98082 1.23603 1.22146 0.82321 0.96310 1.16896 1.23177 1.01184 0.83513 0.94264 1.69195 1.08534 1.25858 1.11415 0.90017 0.83179 0.78335 0.77437 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.68 11.44 21.80 0.25 -37.43 14 2 C 0.02 1.04 5.49 85.20 0.47 1.51 14 3 Si 1.00 34.88 29.56 68.60 2.03 36.91 14 4 H -0.26 -8.81 7.11 99.48 0.71 -8.11 14 5 H -0.27 -8.86 7.11 99.48 0.71 -8.16 14 6 H -0.25 -8.46 7.11 99.48 0.71 -7.75 14 7 C -0.44 -22.19 9.10 23.34 0.21 -21.98 14 8 H 0.10 4.75 7.84 -2.91 -0.02 4.73 14 9 C 0.20 10.77 6.53 39.63 0.26 11.03 14 10 C -0.24 -12.07 10.82 84.33 0.91 -11.16 14 11 N -0.29 -13.74 2.94 -348.64 -1.02 -14.76 14 12 C -0.14 -5.44 11.80 83.32 0.98 -4.45 14 13 C 0.00 0.16 11.83 83.81 0.99 1.15 14 14 N -0.52 -23.42 11.29 -193.91 -2.19 -25.61 14 15 C 0.07 3.23 7.84 134.15 1.05 4.28 14 16 C 0.17 8.18 11.31 85.58 0.97 9.15 14 17 N -0.44 -23.65 7.89 -187.87 -1.48 -25.13 14 18 H 0.29 12.92 8.30 -92.71 -0.77 12.15 14 19 H 0.15 6.75 8.06 -2.91 -0.02 6.73 14 20 H 0.20 6.01 8.06 -2.91 -0.02 5.98 14 21 H 0.21 5.68 8.06 -2.91 -0.02 5.65 14 22 H 0.18 7.64 8.06 -2.91 -0.02 7.61 14 Total: -1.00 -62.32 207.52 4.66 -57.66 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.23 Total: 18.85 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 5.84 Total: -10.47 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -4.45 Total: -102.94 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Total: -62.32 4.66 -57.66 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709659582.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.388 kcal (2) G-P(sol) polarization free energy of solvation -62.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds