Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29590 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48508 * 109.47025 * 240.00032 * 3 2 1 5 5 H 1.48497 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47416 * 119.99796 * 3 2 1 7 7 C 1.46369 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00109 * 164.93126 * 7 2 1 9 9 C 1.41122 * 119.99570 * 344.93441 * 7 2 1 10 10 C 1.41661 * 120.95862 * 336.89608 * 9 7 2 11 11 C 1.36313 * 119.51870 * 180.02562 * 10 9 7 12 12 N 1.32132 * 121.60268 * 359.72386 * 11 10 9 13 13 C 1.33553 * 122.09305 * 0.56605 * 12 11 10 14 14 N 1.33530 * 119.86325 * 179.70683 * 13 12 11 15 15 C 1.25002 * 119.99811 * 359.73615 * 14 13 12 16 16 O 8.17557 * 83.35732 * 176.93887 * 2 1 3 17 17 C 1.40654 * 120.95336 * 156.91700 * 9 7 2 18 18 H 0.96991 * 120.00065 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.23860 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.19474 * 179.97438 * 11 10 9 21 21 H 1.08007 * 120.79055 * 359.95478 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2299 1.6177 0.0000 4 1 3.0837 1.6964 -1.2126 5 1 1.2649 2.7464 -0.0006 6 1 3.0836 1.6965 1.2125 7 6 2.0278 -1.2676 0.0006 8 1 3.0800 -1.2837 -0.2426 9 6 1.3586 -2.4685 0.3188 10 6 0.1692 -2.4582 1.0883 11 6 -0.4529 -3.6357 1.3790 12 7 0.0230 -4.7933 0.9554 13 6 1.1417 -4.8782 0.2309 14 7 1.5859 -6.0722 -0.1690 15 6 0.9576 -7.1080 0.1391 16 8 0.3502 -8.1091 0.4337 17 6 1.8535 -3.7103 -0.1187 18 1 -0.4850 0.8400 -0.0004 19 1 -0.2415 -1.5241 1.4421 20 1 -1.3591 -3.6218 1.9664 21 1 2.7565 -3.7690 -0.7083 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710078222.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = 19.402396 kcal Electronic energy + Delta-G solvation = -10536.861657 eV Core-core repulsion = 8378.340521 eV Total energy + Delta-G solvation = -2158.521136 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 190.048 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.21091 -38.27027 -35.64890 -33.80951 -30.97111 -28.74716 -25.92468 -22.71735 -21.55504 -19.52155 -17.88043 -16.31240 -15.62766 -15.54598 -15.27885 -14.29092 -14.00787 -13.14981 -12.81578 -12.63275 -11.62625 -11.37100 -11.18100 -10.66483 -10.49813 -10.17454 -9.96568 -9.55441 -8.30146 -8.28298 -7.20118 -7.04815 -4.71559 1.71132 1.83414 2.64063 2.90198 2.91592 3.05577 3.51049 3.67599 3.83938 4.43191 5.51953 5.63734 6.33735 6.60529 6.63483 6.80458 6.94975 7.29126 7.39017 7.72936 7.81128 8.20284 8.50599 8.62136 8.68563 9.31507 9.76214 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.093291 B = 0.009017 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.062857 B = 3104.372488 C = 3343.505588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.075 3.925 3 Si 0.923 3.077 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.452 4.452 8 H 0.088 0.912 9 C 0.132 3.868 10 C -0.224 4.224 11 C 0.106 3.894 12 N -0.629 5.629 13 C 0.323 3.677 14 N -0.479 5.479 15 C 0.651 3.349 16 O -0.373 6.373 17 C -0.250 4.250 18 H 0.292 0.708 19 H 0.129 0.871 20 H 0.123 0.877 21 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 0.652 0.408 1.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.151 4.151 3 Si 0.746 3.254 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.482 4.482 8 H 0.107 0.893 9 C 0.124 3.876 10 C -0.246 4.246 11 C -0.044 4.044 12 N -0.352 5.352 13 C 0.099 3.901 14 N -0.227 5.227 15 C 0.349 3.651 16 O -0.226 6.226 17 C -0.275 4.275 18 H 0.104 0.896 19 H 0.146 0.854 20 H 0.140 0.860 21 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.056 -0.415 0.425 1.211 hybrid contribution 0.211 1.290 -0.010 1.308 sum 1.267 0.876 0.415 1.595 Atomic orbital electron populations 1.69144 1.08821 1.30863 1.28797 1.27504 0.94571 1.02137 0.90916 0.86126 0.80180 0.78485 0.80609 1.18392 1.20006 1.18236 1.20800 0.96967 0.89218 1.41181 0.89345 1.17613 0.90835 0.91635 0.87501 1.21958 1.00320 0.98245 1.04114 1.21339 0.97794 0.87963 0.97260 1.68014 1.15210 1.30545 1.21475 1.17881 0.92159 0.84332 0.95738 1.64208 1.27858 0.95062 1.35555 1.26603 0.73216 0.86677 0.78590 1.90911 1.42854 1.26209 1.62615 1.21597 1.04734 0.90147 1.11029 0.89596 0.85356 0.85997 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.57 10.92 55.97 0.61 -16.96 14 2 C 0.08 1.71 5.40 -15.23 -0.08 1.63 14 3 Si 0.92 16.72 29.66 -169.99 -5.04 11.68 14 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 5 H -0.28 -4.82 7.11 56.52 0.40 -4.41 14 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 14 7 C -0.45 -11.13 9.39 -35.22 -0.33 -11.46 14 8 H 0.09 2.07 7.97 -52.49 -0.42 1.65 14 9 C 0.13 3.36 5.64 -106.59 -0.60 2.76 14 10 C -0.22 -5.55 8.81 -38.97 -0.34 -5.89 14 11 C 0.11 2.51 11.07 -18.12 -0.20 2.31 14 12 N -0.63 -15.29 9.42 -13.35 -0.13 -15.41 14 13 C 0.32 7.70 7.31 -158.32 -1.16 6.54 14 14 N -0.48 -10.05 10.12 14.67 0.15 -9.90 14 15 C 0.65 12.50 15.89 49.98 0.79 13.30 14 16 O -0.37 -7.08 17.99 6.01 0.11 -6.97 14 17 C -0.25 -6.11 9.93 -37.56 -0.37 -6.48 14 18 H 0.29 6.04 8.27 -40.82 -0.34 5.71 14 19 H 0.13 3.18 6.09 -52.49 -0.32 2.86 14 20 H 0.12 2.52 8.06 -52.49 -0.42 2.09 14 21 H 0.11 2.58 8.06 -52.48 -0.42 2.16 14 LS Contribution 211.33 15.07 3.18 3.18 Total: -1.00 -26.02 211.33 -4.13 -30.15 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -0.72 Total: 1.52 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.29 Total: 2.71 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.63 Total: -42.27 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.11 Total: -6.97 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.04 Total: 11.68 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -26.02 -4.13 -30.15 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710078222.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.552 kcal (2) G-P(sol) polarization free energy of solvation -26.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds