Wall clock time and date at job start Mon Mar 30 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29590 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48508 * 109.47025 * 240.00032 * 3 2 1 5 5 H 1.48497 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47416 * 119.99796 * 3 2 1 7 7 C 1.46369 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00109 * 164.93126 * 7 2 1 9 9 C 1.41122 * 119.99570 * 344.93441 * 7 2 1 10 10 C 1.41661 * 120.95862 * 336.89608 * 9 7 2 11 11 C 1.36313 * 119.51870 * 180.02562 * 10 9 7 12 12 N 1.32132 * 121.60268 * 359.72386 * 11 10 9 13 13 C 1.33553 * 122.09305 * 0.56605 * 12 11 10 14 14 N 1.33530 * 119.86325 * 179.70683 * 13 12 11 15 15 C 1.25002 * 119.99811 * 359.73615 * 14 13 12 16 16 O 8.17557 * 83.35732 * 176.93887 * 2 1 3 17 17 C 1.40654 * 120.95336 * 156.91700 * 9 7 2 18 18 H 0.96991 * 120.00065 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.23860 * 0.02562 * 10 9 7 20 20 H 1.07998 * 119.19474 * 179.97438 * 11 10 9 21 21 H 1.08007 * 120.79055 * 359.95478 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2299 1.6177 0.0000 4 1 3.0837 1.6964 -1.2126 5 1 1.2649 2.7464 -0.0006 6 1 3.0836 1.6965 1.2125 7 6 2.0278 -1.2676 0.0006 8 1 3.0800 -1.2837 -0.2426 9 6 1.3586 -2.4685 0.3188 10 6 0.1692 -2.4582 1.0883 11 6 -0.4529 -3.6357 1.3790 12 7 0.0230 -4.7933 0.9554 13 6 1.1417 -4.8782 0.2309 14 7 1.5859 -6.0722 -0.1690 15 6 0.9576 -7.1080 0.1391 16 8 0.3502 -8.1091 0.4337 17 6 1.8535 -3.7103 -0.1187 18 1 -0.4850 0.8400 -0.0004 19 1 -0.2415 -1.5241 1.4421 20 1 -1.3591 -3.6218 1.9664 21 1 2.7565 -3.7690 -0.7083 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710078222.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:54 Heat of formation + Delta-G solvation = 3.289767 kcal Electronic energy + Delta-G solvation = -10537.560353 eV Core-core repulsion = 8378.340521 eV Total energy + Delta-G solvation = -2159.219832 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 190.048 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.94688 -39.96629 -37.38815 -35.58265 -32.81097 -30.55887 -27.76362 -24.48229 -23.39355 -21.24886 -19.59863 -18.10651 -17.26107 -17.23769 -16.97755 -16.04404 -15.75084 -14.86004 -14.61998 -14.30881 -13.28579 -12.99874 -12.87071 -12.36876 -12.02424 -11.88373 -11.75617 -11.25324 -10.16994 -10.14415 -8.98828 -8.80565 -6.58802 0.06973 0.10394 0.90945 1.42158 1.49310 1.54700 1.81161 2.15316 2.20827 2.67009 3.65034 3.85447 4.55417 4.79254 4.85425 4.97214 5.13349 5.46270 5.52336 5.87297 6.01754 6.38852 6.65456 6.77375 6.95931 7.46901 8.07112 Molecular weight = 190.05amu Principal moments of inertia in cm(-1) A = 0.093291 B = 0.009017 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.062857 B = 3104.372488 C = 3343.505588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.039 3.961 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.479 4.479 8 H 0.092 0.908 9 C 0.107 3.893 10 C -0.243 4.243 11 C 0.105 3.895 12 N -0.643 5.643 13 C 0.325 3.675 14 N -0.486 5.486 15 C 0.674 3.326 16 O -0.362 6.362 17 C -0.272 4.272 18 H 0.304 0.696 19 H 0.124 0.876 20 H 0.149 0.851 21 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 1.313 0.444 2.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.508 4.508 8 H 0.110 0.890 9 C 0.099 3.901 10 C -0.266 4.266 11 C -0.044 4.044 12 N -0.367 5.367 13 C 0.101 3.899 14 N -0.234 5.234 15 C 0.373 3.627 16 O -0.213 6.213 17 C -0.297 4.297 18 H 0.117 0.883 19 H 0.142 0.858 20 H 0.167 0.833 21 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.161 0.201 0.460 1.265 hybrid contribution 0.120 1.005 -0.031 1.012 sum 1.281 1.205 0.429 1.810 Atomic orbital electron populations 1.69151 1.10200 1.32666 1.27945 1.28398 0.95356 1.04997 0.89814 0.85008 0.78833 0.73862 0.80582 1.17956 1.18557 1.17987 1.21171 0.97465 0.90334 1.41802 0.89022 1.17977 0.91526 0.92515 0.88073 1.21964 1.00863 0.98534 1.05235 1.21719 0.98346 0.87487 0.96848 1.68098 1.15648 1.30717 1.22284 1.18011 0.91786 0.85131 0.94990 1.64113 1.28298 0.94720 1.36312 1.26273 0.72577 0.86358 0.77480 1.90938 1.42369 1.25948 1.62054 1.21697 1.05491 0.90396 1.12164 0.88306 0.85850 0.83341 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.79 10.92 23.18 0.25 -35.53 14 2 C 0.04 1.75 5.40 87.14 0.47 2.22 14 3 Si 1.00 33.02 29.66 68.60 2.03 35.05 14 4 H -0.26 -8.25 7.11 99.48 0.71 -7.55 14 5 H -0.26 -8.02 7.11 99.48 0.71 -7.31 14 6 H -0.26 -8.34 7.11 99.48 0.71 -7.63 14 7 C -0.48 -23.71 9.39 25.10 0.24 -23.48 14 8 H 0.09 4.31 7.97 -2.91 -0.02 4.29 14 9 C 0.11 5.51 5.64 -21.14 -0.12 5.39 14 10 C -0.24 -12.16 8.81 22.67 0.20 -11.96 14 11 C 0.11 4.93 11.07 84.20 0.93 5.86 14 12 N -0.64 -30.83 9.42 -196.15 -1.85 -32.68 14 13 C 0.33 15.41 7.31 134.99 0.99 16.40 14 14 N -0.49 -19.96 10.12 -218.99 -2.22 -22.18 14 15 C 0.67 24.83 15.89 131.22 2.09 26.92 14 16 O -0.36 -12.93 17.99 -1.40 -0.03 -12.96 14 17 C -0.27 -13.46 9.93 23.58 0.23 -13.22 14 18 H 0.30 12.26 8.27 -92.72 -0.77 11.49 14 19 H 0.12 6.18 6.09 -2.91 -0.02 6.16 14 20 H 0.15 5.96 8.06 -2.91 -0.02 5.93 14 21 H 0.12 5.48 8.06 -2.91 -0.02 5.46 14 Total: -1.00 -53.82 211.33 4.49 -49.33 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.27 Total: 10.85 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.02 Total: 8.13 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -3.81 Total: -90.40 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.03 Total: -12.96 kcal Atomic # 14 Polarization: 33.02 SS G_CDS: 2.03 Total: 35.05 kcal Total: -53.82 4.49 -49.33 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710078222.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.620 kcal (2) G-P(sol) polarization free energy of solvation -53.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds