Wall clock time and date at job start Mon Mar 30 2020 02:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00031 * 2 1 4 4 H 1.48504 * 109.46844 * 239.99413 * 3 2 1 5 5 H 1.48504 * 109.47143 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47180 * 119.99680 * 3 2 1 7 7 C 1.38810 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00455 * 163.10565 * 7 2 1 9 9 N 1.36943 * 120.00037 * 342.82392 * 7 2 1 10 10 C 1.46921 * 120.63044 * 152.20697 * 9 7 2 11 11 C 1.53192 * 108.77526 * 126.37158 * 10 9 7 12 12 C 1.53038 * 109.31272 * 54.63294 * 11 10 9 13 13 H 1.09006 * 109.46033 * 58.64579 * 12 11 10 14 14 O 1.42900 * 109.46114 * 178.61517 * 12 11 10 15 15 C 1.53038 * 109.53980 * 298.63537 * 12 11 10 16 16 H 1.09005 * 109.49973 * 181.30923 * 15 12 11 17 17 F 1.39896 * 109.49685 * 301.41363 * 15 12 11 18 18 C 1.46924 * 120.62977 * 331.93320 * 9 7 2 19 19 H 0.97001 * 120.00158 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.58635 * 246.15805 * 10 9 7 21 21 H 1.09003 * 109.58996 * 6.44107 * 10 9 7 22 22 H 1.08996 * 109.49554 * 174.58304 * 11 10 9 23 23 H 1.08997 * 109.50041 * 294.65143 * 11 10 9 24 24 H 0.96702 * 113.99819 * 180.02562 * 14 12 11 25 25 H 1.09000 * 109.58693 * 353.41003 * 18 9 7 26 26 H 1.08999 * 109.59269 * 113.84051 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2713 9 7 1.3714 -2.3615 0.3513 10 6 1.8183 -3.6542 -0.1850 11 6 2.0723 -4.6116 0.9836 12 6 0.8160 -4.6926 1.8538 13 1 -0.0228 -5.0377 1.2493 14 8 1.0385 -5.6096 2.9269 15 6 0.4981 -3.3084 2.4238 16 1 -0.3833 -3.3714 3.0621 17 9 1.5868 -2.8508 3.1736 18 6 0.2297 -2.3369 1.2757 19 1 -0.4850 0.8400 -0.0004 20 1 1.0463 -4.0670 -0.8344 21 1 2.7381 -3.5158 -0.7533 22 1 2.3115 -5.6022 0.5970 23 1 2.9061 -4.2432 1.5812 24 1 0.2818 -5.7116 3.5204 25 1 0.1030 -1.3299 1.6732 26 1 -0.6746 -2.6400 0.7480 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885263967.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:02 Heat of formation + Delta-G solvation = -106.631673 kcal Electronic energy + Delta-G solvation = -12450.194082 eV Core-core repulsion = 10056.697479 eV Total energy + Delta-G solvation = -2393.496603 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 189.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.41302 -39.20679 -37.12241 -34.23172 -31.41756 -31.34083 -26.92216 -24.03314 -23.73532 -20.84117 -18.99624 -18.29801 -17.26920 -16.64500 -16.53747 -15.81387 -15.57780 -14.82164 -14.54785 -14.11450 -13.78032 -13.26172 -12.92151 -12.85073 -12.58564 -12.45332 -12.23373 -11.77381 -11.70399 -11.29302 -10.72229 -10.58097 -8.75984 -7.93792 -5.38219 1.44825 1.48427 1.54744 2.48306 3.16686 3.30322 3.52814 3.65226 3.83936 3.93575 4.24617 4.34629 4.51576 4.79846 4.91117 4.97114 5.05728 5.20404 5.37771 5.50056 5.60356 6.33755 6.84411 7.07878 7.77097 8.27495 9.13409 Molecular weight = 189.09amu Principal moments of inertia in cm(-1) A = 0.062984 B = 0.013071 C = 0.012503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.451688 B = 2141.605363 C = 2238.886513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.267 4.267 8 H 0.063 0.937 9 N -0.609 5.609 10 C 0.143 3.857 11 C -0.121 4.121 12 C 0.095 3.905 13 H 0.087 0.913 14 O -0.574 6.574 15 C 0.035 3.965 16 H 0.103 0.897 17 F -0.227 7.227 18 C 0.150 3.850 19 H 0.253 0.747 20 H 0.035 0.965 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.393 0.607 25 H 0.063 0.937 26 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 -8.072 3.399 8.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.397 4.397 8 H 0.081 0.919 9 N -0.332 5.332 10 C 0.018 3.982 11 C -0.160 4.160 12 C 0.036 3.964 13 H 0.105 0.895 14 O -0.382 6.382 15 C -0.003 4.003 16 H 0.121 0.879 17 F -0.208 7.208 18 C 0.023 3.977 19 H 0.062 0.938 20 H 0.053 0.947 21 H 0.081 0.919 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.243 0.757 25 H 0.082 0.918 26 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.277 -7.975 3.098 8.561 hybrid contribution -0.213 1.205 0.311 1.263 sum -0.490 -6.770 3.409 7.596 Atomic orbital electron populations 1.70113 1.06421 1.26160 1.55028 1.25755 0.96183 1.01413 1.00893 0.85366 0.77737 0.79282 0.78244 1.19771 1.21504 1.21058 1.19429 0.92893 0.86196 1.41161 0.91881 1.44202 1.36010 1.02666 1.50329 1.21075 0.98484 0.85092 0.93568 1.21892 0.96648 1.00505 0.96979 1.22221 0.99318 0.86458 0.88405 0.89491 1.86499 1.45270 1.64034 1.42424 1.23184 0.86697 0.96657 0.93757 0.87893 1.92722 1.58877 1.90848 1.78347 1.21128 0.89682 0.98082 0.88798 0.93839 0.94734 0.91888 0.89142 0.93433 0.75676 0.91820 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.48 11.20 21.65 0.24 -54.23 15 2 C -0.05 -2.64 4.91 84.86 0.42 -2.22 15 3 Si 0.97 45.52 29.59 68.60 2.03 47.55 15 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 15 6 H -0.28 -13.35 7.11 99.48 0.71 -12.65 15 7 C -0.27 -15.00 9.58 84.03 0.81 -14.20 15 8 H 0.06 3.49 7.89 -2.91 -0.02 3.47 15 9 N -0.61 -30.88 2.98 -699.92 -2.09 -32.96 15 10 C 0.14 5.88 6.52 86.36 0.56 6.44 15 11 C -0.12 -4.33 5.61 30.67 0.17 -4.16 15 12 C 0.10 3.10 3.24 30.62 0.10 3.20 15 13 H 0.09 2.47 8.14 -2.38 -0.02 2.45 15 14 O -0.57 -16.73 13.28 -148.98 -1.98 -18.70 15 15 C 0.04 1.34 3.80 30.53 0.12 1.45 15 16 H 0.10 3.14 8.14 -2.38 -0.02 3.12 15 17 F -0.23 -10.26 16.43 44.97 0.74 -9.52 15 18 C 0.15 7.09 5.01 86.22 0.43 7.52 15 19 H 0.25 14.29 8.31 -92.71 -0.77 13.51 15 20 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.06 2.55 7.93 -2.39 -0.02 2.53 15 22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 23 H 0.05 1.93 7.74 -2.39 -0.02 1.91 15 24 H 0.39 7.43 9.08 -74.06 -0.67 6.76 15 25 H 0.06 3.48 6.06 -2.39 -0.01 3.47 15 26 H 0.03 1.61 8.14 -2.39 -0.02 1.59 15 Total: -1.00 -66.08 221.20 2.06 -64.02 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.51 Total: 5.82 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 2.60 Total: -1.96 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.84 Total: -87.20 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.98 Total: -18.70 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 0.74 Total: -9.52 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -66.08 2.06 -64.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885263967.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.613 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds