Wall clock time and date at job start Mon Mar 30 2020 02:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86797 * 120.00529 * 2 1 4 4 H 1.48498 * 109.47098 * 240.00130 * 3 2 1 5 5 H 1.48500 * 109.47043 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47396 * 119.99947 * 3 2 1 7 7 C 1.38643 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99883 * 179.97438 * 7 2 1 9 9 O 1.34922 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.42901 * 116.99796 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.57332 * 29.84476 * 10 9 7 12 12 C 1.53203 * 109.58036 * 269.66474 * 10 9 7 13 13 C 1.53030 * 109.30370 * 182.46163 * 12 10 9 14 14 N 1.46846 * 109.52435 * 59.17688 * 13 12 10 15 15 C 1.46856 * 111.19871 * 298.25760 * 14 13 12 16 16 C 1.53039 * 109.51787 * 61.74404 * 15 14 13 17 17 H 1.09002 * 109.50563 * 60.76214 * 16 15 14 18 18 F 1.39900 * 109.50077 * 180.84100 * 16 15 14 19 19 H 0.97007 * 119.99350 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.49417 * 62.50786 * 12 10 9 21 21 H 1.09005 * 109.49195 * 302.40906 * 12 10 9 22 22 H 1.09004 * 109.46094 * 299.16423 * 13 12 10 23 23 H 1.08994 * 109.46717 * 179.19390 * 13 12 10 24 24 H 1.00895 * 110.99739 * 62.35751 * 14 13 12 25 25 H 1.09000 * 109.46462 * 301.73144 * 15 14 13 26 26 H 1.09002 * 109.45930 * 181.75412 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1037 1.6963 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3342 -2.3691 -0.0005 10 6 2.1124 -3.5677 -0.0017 11 1 3.0587 -3.3890 0.5088 12 6 2.3838 -4.0022 -1.4455 13 6 3.1644 -5.3184 -1.4394 14 7 2.3862 -6.3473 -0.7379 15 6 2.1542 -5.9744 0.6634 16 6 1.3433 -4.6778 0.7200 17 1 0.3802 -4.8294 0.2326 18 9 1.1389 -4.3126 2.0549 19 1 -0.4849 0.8402 0.0004 20 1 2.9684 -3.2347 -1.9526 21 1 1.4370 -4.1431 -1.9670 22 1 4.1171 -5.1732 -0.9298 23 1 3.3466 -5.6375 -2.4655 24 1 1.5147 -6.5281 -1.2131 25 1 3.1116 -5.8261 1.1631 26 1 1.6026 -6.7700 1.1643 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885264323.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:55 Heat of formation + Delta-G solvation = -116.845706 kcal Electronic energy + Delta-G solvation = -12130.725833 eV Core-core repulsion = 9736.786317 eV Total energy + Delta-G solvation = -2393.939516 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 189.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.61974 -39.81135 -37.57328 -34.01253 -31.63710 -31.01979 -26.87668 -24.25096 -23.76591 -21.71797 -19.78830 -18.00663 -17.30002 -16.64287 -16.50700 -16.18125 -15.95652 -14.99144 -14.65617 -14.35386 -13.81434 -13.57241 -13.16970 -13.03069 -12.78836 -12.57361 -12.18172 -12.05650 -11.68878 -11.42959 -11.11030 -10.19600 -9.60232 -8.22552 -5.92874 1.35715 1.44054 1.51056 2.27649 3.09809 3.14531 3.25988 3.56955 3.82806 3.86697 3.99064 4.20878 4.34693 4.40546 4.66567 4.78922 4.87564 4.94520 5.05538 5.15157 5.27210 5.83846 6.15088 6.33616 7.19611 7.95479 9.01789 Molecular weight = 189.09amu Principal moments of inertia in cm(-1) A = 0.057996 B = 0.011334 C = 0.010282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.676514 B = 2469.928087 C = 2722.639375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.006 2.994 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.377 4.377 8 H 0.071 0.929 9 O -0.326 6.326 10 C 0.059 3.941 11 H 0.041 0.959 12 C -0.164 4.164 13 C 0.065 3.935 14 N -0.667 5.667 15 C 0.052 3.948 16 C 0.058 3.942 17 H 0.077 0.923 18 F -0.227 7.227 19 H 0.261 0.739 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.353 0.647 25 H 0.086 0.914 26 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -10.113 -2.246 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.236 4.236 3 Si 0.828 3.172 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.089 0.911 9 O -0.242 6.242 10 C 0.000 4.000 11 H 0.059 0.941 12 C -0.204 4.204 13 C -0.065 4.065 14 N -0.296 5.296 15 C -0.079 4.079 16 C 0.019 3.981 17 H 0.095 0.905 18 F -0.208 7.208 19 H 0.070 0.930 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.124 0.876 24 H 0.171 0.829 25 H 0.105 0.895 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.514 -10.434 -2.082 12.476 hybrid contribution -0.508 1.811 0.095 1.883 sum 6.006 -8.623 -1.988 10.695 Atomic orbital electron populations 1.70193 1.07658 1.27387 1.53261 1.26267 0.96788 1.02118 0.98433 0.84815 0.77260 0.75782 0.79345 1.18487 1.20278 1.19056 1.21290 0.90661 0.83382 1.50197 0.91096 1.85620 1.33753 1.11722 1.93097 1.22749 0.93891 0.87023 0.96327 0.94118 1.22759 1.01448 1.00192 0.95959 1.22108 0.96494 0.87006 1.00849 1.60773 1.24779 1.42273 1.01726 1.22600 1.00383 0.92700 0.92173 1.22912 1.01185 0.96711 0.77267 0.90485 1.92742 1.96631 1.93653 1.37793 0.92997 0.91880 0.92106 0.90338 0.87582 0.82853 0.89547 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.38 13.67 21.61 0.30 -61.09 15 2 C -0.04 -2.60 5.49 84.83 0.47 -2.13 15 3 Si 1.01 45.89 29.55 68.60 2.03 47.92 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 7 C -0.38 -22.79 9.78 67.92 0.66 -22.13 15 8 H 0.07 3.99 7.64 -2.91 -0.02 3.97 15 9 O -0.33 -19.47 9.41 -81.91 -0.77 -20.24 15 10 C 0.06 2.63 2.47 30.70 0.08 2.70 15 11 H 0.04 1.84 7.80 -2.39 -0.02 1.82 15 12 C -0.16 -5.79 5.71 30.67 0.18 -5.61 15 13 C 0.07 1.62 6.55 86.32 0.57 2.19 15 14 N -0.67 -15.61 6.87 -513.99 -3.53 -19.14 15 15 C 0.05 1.39 6.29 86.32 0.54 1.93 15 16 C 0.06 2.18 3.68 30.65 0.11 2.30 15 17 H 0.08 2.91 8.14 -2.39 -0.02 2.89 15 18 F -0.23 -10.15 17.06 44.97 0.77 -9.38 15 19 H 0.26 15.86 8.31 -92.70 -0.77 15.09 15 20 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 21 H 0.06 2.19 8.14 -2.38 -0.02 2.18 15 22 H 0.08 1.92 8.14 -2.38 -0.02 1.90 15 23 H 0.11 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.35 7.34 8.86 -89.70 -0.79 6.55 15 25 H 0.09 2.27 8.14 -2.39 -0.02 2.26 15 26 H 0.11 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -73.67 227.47 1.77 -71.90 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.38 Total: 10.79 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 2.60 Total: -20.75 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.23 Total: -80.23 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.77 Total: -20.24 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 0.77 Total: -9.38 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -73.67 1.77 -71.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885264323.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.948 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds