Wall clock time and date at job start Mon Mar 30 2020 01:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38519 * 119.83909 * 2 1 4 4 C 1.39290 * 120.42828 * 179.97438 * 3 2 1 5 5 N 1.39684 * 119.95500 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.09278 * 359.72365 * 4 3 2 7 7 C 1.50697 * 120.16126 * 180.29169 * 6 4 3 8 8 C 1.40568 * 119.67416 * 0.57742 * 6 4 3 9 9 C 1.41406 * 120.20639 * 179.70154 * 8 6 4 10 10 H 1.08007 * 120.00158 * 334.22236 * 9 8 6 11 11 C 1.39923 * 120.00127 * 154.22666 * 9 8 6 12 12 N 1.30827 * 120.00192 * 334.57719 * 11 9 8 13 13 Si 1.86806 * 120.00215 * 154.58108 * 11 9 8 14 14 H 1.48499 * 109.47026 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47021 * 300.00128 * 13 11 9 16 16 H 1.48505 * 109.46817 * 59.99623 * 13 11 9 17 17 C 1.37645 * 119.83754 * 180.02562 * 2 1 3 18 18 H 1.09000 * 109.47178 * 269.97207 * 1 2 3 19 19 H 1.08994 * 109.47374 * 29.97624 * 1 2 3 20 20 H 1.09003 * 109.46975 * 149.97820 * 1 2 3 21 21 H 1.08004 * 119.78555 * 359.97438 * 3 2 1 22 22 H 0.96997 * 119.99698 * 0.02562 * 5 4 3 23 23 H 0.97003 * 119.99713 * 180.02562 * 5 4 3 24 24 H 1.08999 * 109.47890 * 270.28064 * 7 6 4 25 25 H 1.09005 * 109.47397 * 30.28488 * 7 6 4 26 26 H 1.09013 * 109.46930 * 150.27922 * 7 6 4 27 27 H 0.97004 * 120.00179 * 354.16816 * 12 11 9 28 28 H 1.08005 * 120.05317 * 359.97383 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2016 0.0000 4 6 3.5891 1.2159 0.0005 5 7 4.2741 2.4332 0.0000 6 6 4.2949 0.0263 0.0068 7 6 5.8018 0.0400 0.0141 8 6 3.5997 -1.1954 0.0004 9 6 4.3100 -2.4181 0.0004 10 1 5.3114 -2.4610 -0.4019 11 6 3.7154 -3.5726 0.5215 12 7 2.7738 -3.4731 1.4242 13 14 4.2662 -5.2562 -0.0718 14 1 3.4873 -6.3076 0.6303 15 1 4.0381 -5.3644 -1.5351 16 1 5.7117 -5.4347 0.2184 17 6 2.1919 -1.1940 -0.0005 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3634 0.8901 -0.5134 20 1 -0.3633 -0.8898 -0.5142 21 1 1.6501 2.1333 -0.0004 22 1 3.7798 3.2678 -0.0004 23 1 5.2440 2.4439 0.0000 24 1 6.1701 0.0459 -1.0118 25 1 6.1546 0.9320 0.5319 26 1 6.1708 -0.8480 0.5276 27 1 2.5463 -2.6057 1.7943 28 1 1.6501 -2.1283 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001562235.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:54 Heat of formation + Delta-G solvation = -24.216156 kcal Electronic energy + Delta-G solvation = -11629.529816 eV Core-core repulsion = 9643.064765 eV Total energy + Delta-G solvation = -1986.465051 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.03870 -36.39625 -35.25275 -33.19006 -29.78771 -29.32659 -27.18221 -25.21011 -22.64608 -21.11527 -19.29292 -17.71979 -16.75104 -16.01908 -15.73389 -15.35592 -14.74905 -14.37675 -13.98686 -13.80461 -13.34095 -13.14485 -12.83581 -12.54380 -12.52755 -12.18135 -11.95005 -11.57965 -11.14299 -10.98197 -10.58814 -9.29365 -9.02594 -8.03864 -6.36841 1.00670 1.22602 1.51989 1.69401 1.81217 2.37288 2.76695 3.31465 3.64199 4.34391 4.48340 4.59558 4.68059 4.85727 4.89311 4.97799 5.04954 5.12845 5.23251 5.36151 5.54462 5.79498 5.90974 6.01736 6.15028 6.32062 6.44013 6.81265 6.99215 7.16630 7.29850 8.12977 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.037939 B = 0.014129 C = 0.010752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.851750 B = 1981.216622 C = 2603.579962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.037 4.037 3 C -0.314 4.314 4 C 0.239 3.761 5 N -0.874 5.874 6 C -0.302 4.302 7 C -0.064 4.064 8 C 0.102 3.898 9 C -0.553 4.553 10 H 0.072 0.928 11 C 0.002 3.998 12 N -0.821 5.821 13 Si 1.115 2.885 14 H -0.273 1.273 15 H -0.266 1.266 16 H -0.258 1.258 17 C -0.281 4.281 18 H 0.067 0.933 19 H 0.077 0.923 20 H 0.054 0.946 21 H 0.114 0.886 22 H 0.399 0.601 23 H 0.397 0.603 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.282 0.718 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.214 4.978 -2.153 5.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.038 4.038 3 C -0.337 4.337 4 C 0.135 3.865 5 N -0.416 5.416 6 C -0.308 4.308 7 C -0.121 4.121 8 C 0.099 3.901 9 C -0.581 4.581 10 H 0.090 0.910 11 C -0.214 4.214 12 N -0.445 5.445 13 Si 0.932 3.068 14 H -0.197 1.197 15 H -0.191 1.191 16 H -0.182 1.182 17 C -0.302 4.302 18 H 0.086 0.914 19 H 0.095 0.905 20 H 0.073 0.927 21 H 0.132 0.868 22 H 0.228 0.772 23 H 0.227 0.773 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.840 3.340 -1.956 3.961 hybrid contribution 0.341 1.939 0.003 1.969 sum 1.182 5.278 -1.954 5.751 Atomic orbital electron populations 1.20692 0.90902 1.02144 1.01901 1.19654 0.95997 0.92665 0.95487 1.20013 0.91874 0.96720 1.25103 1.17454 0.91309 0.86009 0.91722 1.42308 1.08745 1.04261 1.86294 1.19536 0.95741 0.91620 1.23911 1.20111 0.91898 1.00450 0.99666 1.17679 0.92082 0.92898 0.87443 1.20670 1.03331 0.94941 1.39175 0.91019 1.28358 0.92268 1.08684 0.92060 1.70539 1.24852 1.30514 1.18546 0.83045 0.77339 0.69398 0.77009 1.19732 1.19123 1.18196 1.20840 0.94297 0.96019 1.19056 0.91391 0.90458 0.92733 0.86804 0.77197 0.77306 0.93879 0.92296 0.93901 0.90556 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.72 10.00 71.24 0.71 -3.00 15 2 C -0.04 -1.75 5.87 -19.94 -0.12 -1.87 15 3 C -0.31 -13.85 9.55 22.59 0.22 -13.63 15 4 C 0.24 10.52 6.73 38.16 0.26 10.78 15 5 N -0.87 -28.57 8.98 -51.49 -0.46 -29.03 15 6 C -0.30 -14.98 5.96 -19.28 -0.11 -15.10 15 7 C -0.06 -2.71 8.95 71.23 0.64 -2.08 15 8 C 0.10 5.70 5.30 -21.31 -0.11 5.59 15 9 C -0.55 -30.81 8.06 23.46 0.19 -30.62 15 10 H 0.07 3.89 6.94 -2.91 -0.02 3.87 15 11 C 0.00 0.11 4.94 85.25 0.42 0.53 15 12 N -0.82 -46.33 12.31 21.82 0.27 -46.07 15 13 Si 1.11 44.95 30.00 68.60 2.06 47.01 15 14 H -0.27 -10.77 7.11 99.48 0.71 -10.07 15 15 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 16 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 17 C -0.28 -15.33 7.59 22.75 0.17 -15.16 15 18 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 19 H 0.08 2.43 8.08 -2.39 -0.02 2.41 15 20 H 0.05 2.00 8.08 -2.39 -0.02 1.98 15 21 H 0.11 4.31 8.06 -2.91 -0.02 4.29 15 22 H 0.40 10.68 8.84 -92.71 -0.82 9.86 15 23 H 0.40 11.55 6.82 -92.71 -0.63 10.91 15 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.06 2.07 6.56 -2.38 -0.02 2.06 15 26 H 0.04 1.91 6.78 -2.38 -0.02 1.90 15 27 H 0.28 16.70 6.69 -92.71 -0.62 16.08 15 28 H 0.08 4.61 6.49 -2.91 -0.02 4.59 15 Total: -1.00 -63.06 235.15 4.00 -59.05 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.12 Total: 33.59 kcal Atomic # 6 Polarization: -66.82 SS G_CDS: 2.26 Total: -64.56 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -0.19 Total: -75.10 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.06 Total: 47.01 kcal Total: -63.06 4.00 -59.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001562235.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.837 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds