Wall clock time and date at job start Mon Mar 30 2020 01:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38227 * 119.61492 * 2 1 4 4 C 1.38632 * 119.15872 * 179.97438 * 3 2 1 5 5 C 1.38673 * 118.41909 * 0.02562 * 4 3 2 6 6 C 1.38180 * 119.16508 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.61844 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46953 * 125.00304 * 7 6 5 9 9 C 1.50706 * 109.46573 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72054 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47474 * 90.00322 * 13 11 9 15 15 H 1.48507 * 109.46754 * 210.00056 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99887 * 13 11 9 17 17 N 1.31858 * 119.61701 * 180.24128 * 2 1 3 18 18 H 1.09000 * 109.47094 * 90.00341 * 1 2 3 19 19 H 1.08995 * 109.47355 * 209.99920 * 1 2 3 20 20 H 1.09004 * 109.47605 * 330.00415 * 1 2 3 21 21 H 1.07997 * 120.42325 * 359.97438 * 3 2 1 22 22 H 1.08000 * 120.78927 * 179.97438 * 4 3 2 23 23 H 1.08003 * 120.42002 * 180.02562 * 5 4 3 24 24 H 1.09000 * 109.46974 * 5.00052 * 7 6 5 25 25 H 1.09001 * 109.46547 * 245.00143 * 7 6 5 26 26 H 1.09000 * 109.47486 * 60.00062 * 8 7 6 27 27 H 1.09001 * 109.47362 * 299.99339 * 8 7 6 28 28 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1907 0.0005 5 6 4.2266 -0.0342 0.0005 6 6 3.4766 -1.1947 0.0005 7 6 4.1727 -2.5314 0.0011 8 6 3.6739 -3.3656 1.1827 9 6 4.3696 -4.7025 1.1828 10 1 5.0916 -4.9356 0.4142 11 6 4.0805 -5.6299 2.1612 12 7 3.1973 -5.3481 3.0940 13 14 4.9433 -7.2867 2.1618 14 1 6.1891 -7.1958 2.9649 15 1 4.0464 -8.3116 2.7538 16 1 5.2802 -7.6698 0.7672 17 7 2.1587 -1.1463 -0.0048 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3634 0.8900 0.5138 21 1 1.6507 2.1373 -0.0004 22 1 4.1366 2.1140 0.0001 23 1 5.3056 -0.0805 0.0013 24 1 5.2485 -2.3807 0.0910 25 1 3.9556 -3.0544 -0.9303 26 1 2.5981 -3.5163 1.0927 27 1 3.8910 -2.8426 2.1140 28 1 2.9936 -6.0007 3.7821 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005331066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:36 Heat of formation + Delta-G solvation = -9.388029 kcal Electronic energy + Delta-G solvation = -11090.658153 eV Core-core repulsion = 9104.836098 eV Total energy + Delta-G solvation = -1985.822056 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.14130 -36.14743 -34.38328 -33.58905 -31.69119 -28.73556 -27.03858 -24.19826 -22.90254 -21.93936 -18.55264 -17.24547 -17.13023 -16.51721 -15.88564 -15.49829 -14.81026 -14.51599 -14.01426 -13.76854 -13.47498 -13.15368 -12.94527 -12.82037 -12.56680 -12.34438 -11.89884 -11.59638 -11.25201 -10.67935 -10.56529 -10.14980 -9.60383 -8.19368 -6.32265 0.24959 0.47532 1.39782 1.42569 1.53781 2.41278 2.89790 3.13304 3.42300 3.90641 3.96705 4.28188 4.29635 4.61225 4.67417 4.72764 4.78322 4.82813 4.85642 5.15293 5.23431 5.29832 5.36117 5.47960 5.72238 5.84502 5.92783 6.21970 6.85104 7.26577 7.37250 8.93020 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.061194 B = 0.008000 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.450374 B = 3499.065435 C = 3787.971755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.101 3.899 3 C -0.183 4.183 4 C -0.069 4.069 5 C -0.190 4.190 6 C 0.119 3.881 7 C -0.058 4.058 8 C 0.044 3.956 9 C -0.545 4.545 10 H 0.066 0.934 11 C -0.003 4.003 12 N -0.937 5.937 13 Si 0.972 3.028 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.261 1.261 17 N -0.525 5.525 18 H 0.089 0.911 19 H 0.055 0.945 20 H 0.103 0.897 21 H 0.169 0.831 22 H 0.173 0.827 23 H 0.151 0.849 24 H 0.082 0.918 25 H 0.064 0.936 26 H -0.009 1.009 27 H -0.020 1.020 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 13.453 -6.571 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.037 4.037 3 C -0.202 4.202 4 C -0.094 4.094 5 C -0.210 4.210 6 C -0.017 4.017 7 C -0.096 4.096 8 C 0.006 3.994 9 C -0.583 4.583 10 H 0.084 0.916 11 C -0.201 4.201 12 N -0.577 5.577 13 Si 0.795 3.205 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.185 1.185 17 N -0.236 5.236 18 H 0.108 0.892 19 H 0.074 0.926 20 H 0.121 0.879 21 H 0.187 0.813 22 H 0.190 0.810 23 H 0.169 0.831 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.010 0.990 27 H -0.002 1.002 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.117 12.612 -6.439 14.204 hybrid contribution 0.644 -0.381 0.384 0.841 sum -0.473 12.230 -6.055 13.655 Atomic orbital electron populations 1.20772 0.87364 1.03740 1.03780 1.21982 0.98543 0.88612 0.94593 1.22282 0.95376 0.99428 1.03160 1.22006 0.94759 0.98564 0.94073 1.22238 1.02257 0.92836 1.03660 1.21616 0.89616 0.96626 0.93884 1.20547 0.98704 0.90712 0.99598 1.18776 0.95162 0.93600 0.91860 1.21730 1.23975 1.00744 1.11834 0.91571 1.26071 0.95864 1.03174 0.94942 1.70144 1.34780 1.37015 1.15738 0.85356 0.78217 0.78001 0.78893 1.19453 1.20822 1.18476 1.67314 1.10710 1.31478 1.14114 0.89240 0.92623 0.87870 0.81305 0.80961 0.83134 0.89960 0.91714 0.99047 1.00205 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.48 10.17 71.24 0.72 -1.76 15 2 C 0.10 3.29 6.78 42.55 0.29 3.58 15 3 C -0.18 -4.57 9.74 22.36 0.22 -4.35 15 4 C -0.07 -1.68 10.18 22.47 0.23 -1.45 15 5 C -0.19 -5.99 9.71 22.36 0.22 -5.77 15 6 C 0.12 4.88 6.17 42.54 0.26 5.15 15 7 C -0.06 -2.63 5.55 29.85 0.17 -2.47 15 8 C 0.04 2.51 4.83 29.85 0.14 2.66 15 9 C -0.54 -32.59 9.11 25.60 0.23 -32.35 15 10 H 0.07 3.71 7.74 -2.91 -0.02 3.69 15 11 C 0.00 -0.19 5.46 84.66 0.46 0.27 15 12 N -0.94 -59.97 13.29 21.45 0.28 -59.69 15 13 Si 0.97 45.62 29.54 68.60 2.03 47.65 15 14 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 15 H -0.28 -12.99 7.11 99.48 0.71 -12.29 15 16 H -0.26 -11.60 7.11 99.48 0.71 -10.90 15 17 N -0.52 -22.33 9.80 -172.07 -1.69 -24.01 15 18 H 0.09 1.91 8.14 -2.39 -0.02 1.89 15 19 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 20 H 0.10 1.83 8.08 -2.38 -0.02 1.81 15 21 H 0.17 2.71 8.06 -2.91 -0.02 2.69 15 22 H 0.17 2.65 8.06 -2.91 -0.02 2.63 15 23 H 0.15 3.96 7.95 -2.91 -0.02 3.94 15 24 H 0.08 3.36 7.87 -2.39 -0.02 3.34 15 25 H 0.06 2.93 8.14 -2.39 -0.02 2.91 15 26 H -0.01 -0.58 7.95 -2.39 -0.02 -0.59 15 27 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 15 28 H 0.26 15.72 8.31 -92.71 -0.77 14.95 15 Total: -1.00 -74.24 248.23 4.69 -69.55 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: 1.12 Total: 3.00 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 2.94 Total: -36.50 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -1.40 Total: -83.70 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -74.24 4.69 -69.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005331066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.157 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds