Wall clock time and date at job start Mon Mar 30 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 O 1.42894 * 109.47449 * 64.99499 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38233 * 119.99377 * 279.72159 * 13 10 9 15 15 C 1.38237 * 119.99600 * 179.78842 * 14 13 10 16 16 C 1.38241 * 119.99990 * 0.44354 * 15 14 13 17 17 C 1.38237 * 119.99716 * 359.81238 * 16 15 14 18 18 C 1.38228 * 120.00326 * 99.99831 * 13 10 9 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.96703 * 113.99928 * 59.99800 * 12 10 9 23 23 H 1.07995 * 120.00514 * 359.97438 * 14 13 10 24 24 H 1.08001 * 120.00058 * 180.28006 * 15 14 13 25 25 H 1.07995 * 120.00194 * 179.83256 * 16 15 14 26 26 H 1.08001 * 119.99824 * 180.02562 * 17 16 15 27 27 H 1.08005 * 119.99906 * 359.97438 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 8 2.9874 -3.6597 1.2106 13 6 1.4956 -4.9631 -0.1402 14 6 0.8988 -5.5305 0.9701 15 6 0.2076 -6.7217 0.8503 16 6 0.1211 -7.3501 -0.3780 17 6 0.7225 -6.7853 -1.4872 18 6 1.4099 -5.5920 -1.3682 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.4413 -3.7546 2.0030 23 1 0.9699 -5.0417 1.9305 24 1 -0.2626 -7.1627 1.7168 25 1 -0.4166 -8.2820 -0.4711 26 1 0.6545 -7.2760 -2.4469 27 1 1.8797 -5.1507 -2.2348 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014503193.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:19 Heat of formation + Delta-G solvation = -61.036202 kcal Electronic energy + Delta-G solvation = -11391.950613 eV Core-core repulsion = 9306.170262 eV Total energy + Delta-G solvation = -2085.780351 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.43109 -37.83334 -35.00849 -32.72850 -31.70228 -30.53508 -26.65236 -23.87187 -23.35799 -21.73564 -18.92037 -17.97789 -16.92159 -16.55294 -16.36122 -15.72907 -14.91017 -14.70500 -14.40711 -14.17183 -13.63018 -13.16832 -12.85473 -12.65651 -12.47357 -12.26642 -11.98531 -11.82541 -11.26335 -10.67581 -10.59917 -9.78577 -9.54114 -8.21673 -6.32221 0.48514 0.53459 1.39364 1.42340 1.50585 2.40270 2.91104 3.10799 3.74285 3.89075 4.00572 4.19193 4.31444 4.47245 4.64987 4.79171 4.80057 5.10758 5.18436 5.34181 5.47736 5.59075 5.62817 5.74567 5.82320 6.15128 6.20017 6.79974 6.90127 7.36239 8.89508 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.065074 B = 0.008587 C = 0.008390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.177399 B = 3260.073183 C = 3336.620453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.011 3.989 10 C 0.156 3.844 11 H 0.087 0.913 12 O -0.565 6.565 13 C -0.122 4.122 14 C -0.131 4.131 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.122 4.122 18 C -0.134 4.134 19 H 0.264 0.736 20 H 0.000 1.000 21 H -0.001 1.001 22 H 0.376 0.624 23 H 0.122 0.878 24 H 0.147 0.853 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 -12.425 -0.130 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.075 0.925 9 C -0.026 4.026 10 C 0.097 3.903 11 H 0.105 0.895 12 O -0.371 6.371 13 C -0.122 4.122 14 C -0.149 4.149 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.140 4.140 18 C -0.152 4.152 19 H 0.073 0.927 20 H 0.019 0.981 21 H 0.018 0.982 22 H 0.224 0.776 23 H 0.140 0.860 24 H 0.165 0.835 25 H 0.170 0.830 26 H 0.166 0.834 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.873 -12.243 -0.542 12.286 hybrid contribution -0.298 1.122 0.316 1.203 sum 0.575 -11.121 -0.226 11.139 Atomic orbital electron populations 1.70088 1.07692 1.27869 1.51661 1.25932 0.95740 1.03203 0.94706 0.85502 0.78268 0.78135 0.79150 1.19253 1.20659 1.19367 1.21493 0.93359 0.91896 1.50463 0.92512 1.19576 0.94162 0.93091 0.95772 1.20797 0.92422 0.90196 0.86890 0.89520 1.86462 1.38137 1.96431 1.16088 1.20849 0.99235 0.96824 0.95319 1.21110 0.98494 0.97043 0.98271 1.21445 0.98598 0.94849 0.99123 1.21524 0.99828 1.01001 0.92397 1.21454 0.97215 0.95124 1.00194 1.21229 1.00719 0.96512 0.96737 0.92721 0.98140 0.98247 0.77552 0.85982 0.83514 0.82970 0.83422 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.87 15 2 C 0.00 0.11 5.46 84.66 0.46 0.57 15 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 15 7 C -0.53 -31.10 8.88 25.60 0.23 -30.87 15 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 15 9 C 0.01 0.60 4.63 29.85 0.14 0.74 15 10 C 0.16 6.83 3.15 29.85 0.09 6.93 15 11 H 0.09 3.85 8.00 -2.38 -0.02 3.83 15 12 O -0.56 -24.03 12.94 -148.98 -1.93 -25.96 15 13 C -0.12 -4.55 4.97 -19.87 -0.10 -4.65 15 14 C -0.13 -4.30 9.32 22.27 0.21 -4.09 15 15 C -0.12 -3.23 10.05 22.27 0.22 -3.01 15 16 C -0.13 -3.11 10.05 22.27 0.22 -2.88 15 17 C -0.12 -3.21 10.05 22.27 0.22 -2.98 15 18 C -0.13 -4.40 9.67 22.27 0.22 -4.19 15 19 H 0.26 15.22 8.31 -92.70 -0.77 14.44 15 20 H 0.00 0.02 8.14 -2.38 -0.02 0.00 15 21 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 15 22 H 0.38 13.65 7.50 -74.06 -0.56 13.09 15 23 H 0.12 3.74 6.78 -2.91 -0.02 3.72 15 24 H 0.15 2.93 8.06 -2.91 -0.02 2.90 15 25 H 0.15 2.52 8.06 -2.91 -0.02 2.49 15 26 H 0.15 2.90 8.06 -2.91 -0.02 2.88 15 27 H 0.12 3.83 8.04 -2.91 -0.02 3.80 15 Total: -1.00 -67.51 240.14 2.90 -64.61 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.60 Total: 15.49 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 1.92 Total: -44.43 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.28 Total: -56.87 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.93 Total: -25.96 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.51 2.90 -64.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014503193.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.574 kcal (2) G-P(sol) polarization free energy of solvation -67.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds