Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00139 * 2 1 4 4 H 1.48497 * 109.47234 * 269.99908 * 3 2 1 5 5 H 1.48503 * 109.46662 * 29.99932 * 3 2 1 6 6 H 1.48499 * 109.47176 * 149.99766 * 3 2 1 7 7 C 1.38815 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99945 * 0.02562 * 7 2 1 9 9 N 1.36945 * 120.00304 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99808 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46662 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47163 * 180.02562 * 11 10 9 13 13 C 1.38225 * 119.61903 * 124.72524 * 12 11 10 14 14 C 1.38628 * 119.15868 * 179.75305 * 13 12 11 15 15 C 1.38681 * 118.42043 * 0.51112 * 14 13 12 16 16 C 1.38179 * 119.15955 * 359.73317 * 15 14 13 17 17 N 1.31858 * 119.61572 * 305.00069 * 12 11 10 18 18 H 0.97001 * 120.00574 * 0.02562 * 1 2 3 19 19 H 0.96998 * 119.99140 * 0.02562 * 9 7 2 20 20 H 1.09001 * 109.47282 * 60.00615 * 10 9 7 21 21 H 1.08995 * 109.47185 * 299.99997 * 10 9 7 22 22 H 1.08997 * 109.47394 * 59.99835 * 11 10 9 23 23 H 1.09004 * 109.47644 * 299.99906 * 11 10 9 24 24 H 1.07994 * 120.42134 * 359.97438 * 13 12 11 25 25 H 1.08000 * 120.79027 * 180.26248 * 14 13 12 26 26 H 1.07997 * 120.41814 * 179.70894 * 15 14 13 27 27 H 1.08004 * 119.61107 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1912 0.0000 12 6 6.3699 -3.4964 -0.0006 13 6 7.3042 -3.7452 -0.9884 14 6 7.9956 -4.9468 -0.9769 15 6 7.7125 -5.8616 0.0261 16 6 6.7613 -5.5451 0.9772 17 7 6.1264 -4.3898 0.9380 18 1 -0.4851 0.8400 -0.0004 19 1 3.8646 -0.3620 -0.0004 20 1 3.8485 -3.0426 -0.8898 21 1 3.8491 -3.0422 0.8902 22 1 5.8797 -1.6196 0.8899 23 1 5.8798 -1.6196 -0.8900 24 1 7.4958 -3.0115 -1.7573 25 1 8.7343 -5.1668 -1.7334 26 1 8.2285 -6.8096 0.0632 27 1 6.5354 -6.2520 1.7618 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020049614.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = 19.508317 kcal Electronic energy + Delta-G solvation = -11077.976188 eV Core-core repulsion = 9027.981261 eV Total energy + Delta-G solvation = -2049.994927 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.07437 -37.23163 -34.55007 -33.28011 -32.82068 -29.76602 -25.98527 -24.43037 -23.55836 -22.31951 -19.73701 -17.69541 -17.13195 -16.71268 -16.14848 -15.98361 -15.39461 -14.85992 -14.63576 -14.26206 -13.90123 -13.25818 -12.98665 -12.68800 -12.45579 -12.32617 -12.06270 -11.82034 -11.01181 -10.76066 -10.26951 -9.84501 -9.34255 -8.04742 -5.40209 0.21887 0.43720 1.37951 1.43119 1.50687 2.48216 2.89166 3.25803 3.33711 3.62102 4.03542 4.08183 4.22131 4.30318 4.34594 4.45781 4.63207 4.82050 4.92076 5.12603 5.19121 5.31644 5.35450 5.71299 5.86939 6.18589 7.04667 7.15229 7.78367 8.01694 9.16981 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.078624 B = 0.007222 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.040192 B = 3876.261718 C = 4071.040889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.249 1.249 7 C -0.244 4.244 8 H 0.049 0.951 9 N -0.758 5.758 10 C 0.170 3.830 11 C -0.072 4.072 12 C 0.114 3.886 13 C -0.174 4.174 14 C -0.074 4.074 15 C -0.175 4.175 16 C 0.082 3.918 17 N -0.520 5.520 18 H 0.260 0.740 19 H 0.369 0.631 20 H 0.014 0.986 21 H 0.019 0.981 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.154 0.846 25 H 0.168 0.832 26 H 0.167 0.833 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.732 -8.741 -2.067 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.174 1.174 7 C -0.375 4.375 8 H 0.067 0.933 9 N -0.404 5.404 10 C 0.043 3.957 11 C -0.110 4.110 12 C -0.023 4.023 13 C -0.194 4.194 14 C -0.100 4.100 15 C -0.195 4.195 16 C -0.075 4.075 17 N -0.231 5.231 18 H 0.069 0.931 19 H 0.203 0.797 20 H 0.033 0.967 21 H 0.037 0.963 22 H 0.099 0.901 23 H 0.117 0.883 24 H 0.172 0.828 25 H 0.186 0.814 26 H 0.185 0.815 27 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 19.909 -8.664 -1.428 21.760 hybrid contribution 0.248 0.697 -0.447 0.864 sum 20.157 -7.967 -1.875 21.755 Atomic orbital electron populations 1.69900 1.07305 1.26974 1.59305 1.25624 0.96278 1.01685 1.02066 0.85286 0.78631 0.78680 0.78455 1.19765 1.21950 1.17371 1.19029 0.82742 0.93523 1.42203 0.93270 1.42682 1.02577 1.04081 1.91098 1.20519 0.90257 0.87217 0.97686 1.20643 0.92947 0.93396 1.03996 1.21197 0.94645 0.94931 0.91514 1.22267 0.97471 0.99878 0.99768 1.22030 0.97767 0.92221 0.97991 1.22508 0.99321 1.02046 0.95582 1.23231 0.92540 0.93043 0.98730 1.67437 1.26475 1.03793 1.25354 0.93128 0.79718 0.96745 0.96276 0.90092 0.88283 0.82809 0.81406 0.81520 0.81144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.18 13.97 21.65 0.30 -64.88 15 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 15 3 Si 0.96 46.36 27.74 68.60 1.90 48.27 15 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 15 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 15 6 H -0.25 -10.77 6.52 99.48 0.65 -10.13 15 7 C -0.24 -14.89 10.47 84.03 0.88 -14.01 15 8 H 0.05 3.31 8.06 -2.91 -0.02 3.29 15 9 N -0.76 -38.13 5.41 -343.45 -1.86 -39.99 15 10 C 0.17 7.29 6.12 86.38 0.53 7.82 15 11 C -0.07 -2.31 5.73 29.85 0.17 -2.14 15 12 C 0.11 3.37 6.18 42.55 0.26 3.63 15 13 C -0.17 -3.82 9.71 22.36 0.22 -3.60 15 14 C -0.07 -1.25 10.18 22.47 0.23 -1.02 15 15 C -0.18 -2.97 10.11 22.36 0.23 -2.75 15 16 C 0.08 1.89 11.18 84.67 0.95 2.84 15 17 N -0.52 -16.37 9.88 -183.88 -1.82 -18.18 15 18 H 0.26 16.21 8.31 -92.71 -0.77 15.44 15 19 H 0.37 17.09 5.53 -92.71 -0.51 16.57 15 20 H 0.01 0.64 8.14 -2.39 -0.02 0.63 15 21 H 0.02 0.90 7.95 -2.39 -0.02 0.88 15 22 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.10 2.71 7.87 -2.39 -0.02 2.70 15 24 H 0.15 2.62 7.95 -2.91 -0.02 2.60 15 25 H 0.17 1.55 8.06 -2.91 -0.02 1.53 15 26 H 0.17 1.57 8.06 -2.91 -0.02 1.55 15 27 H 0.17 3.05 8.06 -2.91 -0.02 3.02 15 Total: -1.00 -75.18 239.02 3.04 -72.14 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.59 Total: 15.39 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 3.93 Total: -12.75 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -3.37 Total: -123.05 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.27 kcal Total: -75.18 3.04 -72.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020049614.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.648 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds