Wall clock time and date at job start Mon Mar 30 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38212 * 119.99909 * 179.78676 * 3 2 1 5 5 C 1.38256 * 119.99940 * 0.44775 * 4 3 2 6 6 C 1.38217 * 120.00102 * 359.80658 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50707 * 119.99903 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.46681 * 35.00400 * 8 7 2 10 10 O 1.42895 * 109.46787 * 155.00037 * 8 7 2 11 11 C 1.50695 * 109.47269 * 275.00416 * 8 7 2 12 12 H 1.08000 * 119.99683 * 359.97438 * 11 8 7 13 13 C 1.37873 * 120.00222 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99920 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00311 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47013 * 90.00470 * 15 13 11 17 17 H 1.48504 * 109.47300 * 210.00272 * 15 13 11 18 18 H 1.48498 * 109.47139 * 329.99933 * 15 13 11 19 19 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 22 22 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.99806 * 180.27742 * 4 3 2 24 24 H 1.07998 * 120.00129 * 179.83731 * 5 4 3 25 25 H 1.07997 * 120.00194 * 180.02562 * 6 5 4 26 26 H 0.96701 * 114.00231 * 60.00563 * 10 8 7 27 27 H 0.96995 * 120.00210 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0045 5 6 4.2717 0.0000 -0.0004 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5021 -0.0116 9 1 0.5337 -2.3930 -0.6002 10 8 2.2636 -3.5224 -0.5860 11 6 1.0866 -2.8817 1.4022 12 1 1.3762 -2.2421 2.2228 13 6 0.3894 -4.0455 1.6480 14 7 0.0372 -4.8246 0.6487 15 14 -0.0537 -4.5165 3.4005 16 1 -1.3787 -3.9428 3.7472 17 1 -0.1091 -5.9959 3.5165 18 1 0.9746 -3.9853 4.3308 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8925 -0.5096 22 1 1.6583 2.1326 0.0004 23 1 4.1204 2.1326 0.0090 24 1 5.3517 0.0000 0.0004 25 1 4.1206 -2.1323 -0.0092 26 1 3.0931 -3.6740 -0.1125 27 1 -0.4529 -5.6436 0.8216 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021953131.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:22 Heat of formation + Delta-G solvation = -56.392477 kcal Electronic energy + Delta-G solvation = -11742.038470 eV Core-core repulsion = 9656.459486 eV Total energy + Delta-G solvation = -2085.578983 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.41028 -37.32114 -34.36945 -33.65073 -31.84241 -28.71772 -27.57388 -25.06132 -22.48785 -21.46226 -19.13005 -17.65039 -16.76283 -16.49058 -16.03010 -15.47900 -14.82518 -14.49210 -14.15889 -13.82835 -13.36177 -13.12125 -12.96296 -12.80915 -12.65893 -12.28997 -12.06667 -11.74289 -11.08117 -10.76463 -10.32737 -9.53841 -9.28174 -8.14296 -6.41212 0.61374 0.66381 1.38698 1.39452 1.50484 2.37537 3.03022 3.09773 4.10939 4.14937 4.20346 4.28022 4.38788 4.57272 4.75640 4.90474 4.94351 5.07671 5.24178 5.40865 5.47514 5.61855 5.70774 5.77358 6.02731 6.09870 6.31132 6.68433 7.28423 7.46758 8.88605 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.045259 B = 0.011964 C = 0.011309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.517254 B = 2339.719966 C = 2475.325249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.106 4.106 3 C -0.125 4.125 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.135 4.135 7 C -0.107 4.107 8 C 0.259 3.741 9 H 0.039 0.961 10 O -0.579 6.579 11 C -0.565 4.565 12 H 0.050 0.950 13 C 0.028 3.972 14 N -0.899 5.899 15 Si 0.959 3.041 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.268 1.268 19 H 0.064 0.936 20 H 0.046 0.954 21 H 0.084 0.916 22 H 0.144 0.856 23 H 0.151 0.849 24 H 0.144 0.856 25 H 0.117 0.883 26 H 0.355 0.645 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 10.096 0.606 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.143 4.143 4 C -0.152 4.152 5 C -0.146 4.146 6 C -0.153 4.153 7 C -0.108 4.108 8 C 0.202 3.798 9 H 0.057 0.943 10 O -0.384 6.384 11 C -0.603 4.603 12 H 0.069 0.931 13 C -0.174 4.174 14 N -0.536 5.536 15 Si 0.783 3.217 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.192 1.192 19 H 0.083 0.917 20 H 0.065 0.935 21 H 0.103 0.897 22 H 0.162 0.838 23 H 0.169 0.831 24 H 0.162 0.838 25 H 0.135 0.865 26 H 0.201 0.799 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.174 9.908 0.115 10.752 hybrid contribution -0.025 -0.727 1.148 1.359 sum 4.150 9.181 1.263 10.154 Atomic orbital electron populations 1.20711 0.91255 1.02110 1.02114 1.19984 0.96788 0.92946 1.00880 1.21281 0.95000 0.97097 1.00931 1.21396 0.94082 0.98717 1.01045 1.21361 1.00719 0.91982 1.00573 1.21060 0.93490 0.99122 1.01663 1.21037 0.95298 0.96790 0.97646 1.18308 0.88018 0.80810 0.92664 0.94327 1.86532 1.34611 1.60401 1.56850 1.21710 1.38020 1.07522 0.93035 0.93149 1.25875 0.94471 0.96061 1.01040 1.70200 1.37623 1.13002 1.32812 0.85567 0.78886 0.77375 0.79839 1.19623 1.20621 1.19222 0.91703 0.93502 0.89684 0.83827 0.83098 0.83800 0.86483 0.79857 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.89 9.61 71.24 0.68 -3.20 15 2 C -0.11 -4.15 5.88 -19.86 -0.12 -4.27 15 3 C -0.13 -3.92 9.70 22.27 0.22 -3.70 15 4 C -0.13 -3.80 10.05 22.27 0.22 -3.58 15 5 C -0.13 -3.99 10.05 22.27 0.22 -3.76 15 6 C -0.14 -5.27 9.30 22.27 0.21 -5.06 15 7 C -0.11 -4.81 5.00 -19.86 -0.10 -4.91 15 8 C 0.26 13.80 2.57 29.10 0.07 13.87 15 9 H 0.04 2.29 6.16 -2.39 -0.01 2.27 15 10 O -0.58 -31.32 12.38 -148.98 -1.84 -33.17 15 11 C -0.57 -31.67 8.74 25.60 0.22 -31.44 15 12 H 0.05 2.82 7.74 -2.91 -0.02 2.80 15 13 C 0.03 1.57 5.40 84.65 0.46 2.03 15 14 N -0.90 -53.99 12.84 21.45 0.28 -53.71 15 15 Si 0.96 43.77 29.54 68.60 2.03 45.80 15 16 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 19 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 20 H 0.05 1.97 6.03 -2.39 -0.01 1.95 15 21 H 0.08 2.45 8.08 -2.38 -0.02 2.43 15 22 H 0.14 3.50 8.06 -2.91 -0.02 3.47 15 23 H 0.15 3.04 8.06 -2.91 -0.02 3.02 15 24 H 0.14 3.44 8.06 -2.91 -0.02 3.42 15 25 H 0.12 4.37 6.41 -2.91 -0.02 4.35 15 26 H 0.36 16.96 7.32 -74.06 -0.54 16.42 15 27 H 0.26 14.88 8.31 -92.71 -0.77 14.11 15 Total: -1.00 -65.91 234.74 3.18 -62.73 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.63 Total: 22.38 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 2.09 Total: -44.03 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.28 Total: -53.71 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -1.84 Total: -33.17 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.91 3.18 -62.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021953131.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.336 kcal (2) G-P(sol) polarization free energy of solvation -65.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds