Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86804 * 119.99534 * 2 1 4 4 H 1.48500 * 109.47313 * 269.99757 * 3 2 1 5 5 H 1.48496 * 109.47121 * 30.00374 * 3 2 1 6 6 H 1.48504 * 109.46919 * 150.00001 * 3 2 1 7 7 C 1.40619 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.38796 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.38233 * 119.99838 * 163.72666 * 9 7 2 11 11 C 1.46241 * 120.00041 * 351.83077 * 10 9 7 12 12 C 1.40422 * 120.19023 * 330.98949 * 11 10 9 13 13 C 1.37627 * 119.80448 * 179.78294 * 12 11 10 14 14 C 1.38827 * 120.19394 * 0.49170 * 13 12 11 15 15 F 1.35094 * 119.81255 * 179.75865 * 14 13 12 16 16 C 1.38837 * 120.38172 * 359.74077 * 14 13 12 17 17 C 1.37628 * 120.18747 * 0.02562 * 16 14 13 18 18 H 0.96998 * 120.00399 * 359.97438 * 1 2 3 19 19 H 1.07998 * 120.00251 * 343.43935 * 9 7 2 20 20 H 1.08007 * 119.99652 * 171.84135 * 10 9 7 21 21 H 1.08004 * 120.09517 * 359.97438 * 12 11 10 22 22 H 1.08005 * 119.90407 * 180.22944 * 13 12 11 23 23 H 1.07994 * 119.90467 * 180.02562 * 16 14 13 24 24 H 1.08006 * 120.09568 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.4870 2.0466 -1.4001 5 1 1.4369 2.6527 0.7001 6 1 3.5371 1.4403 0.7001 7 6 2.0088 -1.2178 -0.0005 8 1 3.0887 -1.2177 -0.0010 9 6 1.3148 -2.4198 -0.0016 10 6 1.9647 -3.5927 -0.3376 11 6 3.3287 -3.5482 -0.8629 12 6 3.7707 -2.4288 -1.5864 13 6 5.0575 -2.3934 -2.0733 14 6 5.9145 -3.4645 -1.8598 15 9 7.1745 -3.4237 -2.3454 16 6 5.4843 -4.5773 -1.1497 17 6 4.2022 -4.6273 -0.6516 18 1 -0.4850 0.8400 0.0004 19 1 0.2683 -2.4394 0.2645 20 1 1.4648 -4.5419 -0.2123 21 1 3.1037 -1.5968 -1.7576 22 1 5.4003 -1.5317 -2.6268 23 1 6.1575 -5.4060 -0.9878 24 1 3.8692 -5.4935 -0.0991 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039088870.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = -26.948206 kcal Electronic energy + Delta-G solvation = -11028.006801 eV Core-core repulsion = 8820.244312 eV Total energy + Delta-G solvation = -2207.762489 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.065 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.95858 -37.86255 -34.66564 -31.99878 -30.17183 -28.21265 -25.34394 -21.88629 -21.54897 -19.01918 -17.39818 -16.33178 -15.37011 -15.13145 -14.68618 -14.25657 -13.41108 -12.91295 -12.57973 -12.25648 -12.13440 -11.53384 -11.48444 -10.93624 -10.89211 -10.31258 -9.96734 -9.74920 -9.36444 -8.47678 -8.10057 -7.22353 -7.05603 -4.49080 2.03887 2.29733 2.81519 2.91723 2.97838 3.59635 3.70578 4.67226 5.22411 5.30395 5.67686 5.72273 6.32782 6.36277 6.45825 6.75857 6.88101 6.99940 7.14118 7.25804 7.33010 7.58557 7.72630 8.03146 8.10529 8.32624 8.68964 8.86998 9.79078 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.043450 B = 0.011315 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.263788 B = 2473.989539 C = 3026.204650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.428 4.428 8 H 0.097 0.903 9 C 0.077 3.923 10 C -0.412 4.412 11 C 0.054 3.946 12 C -0.137 4.137 13 C -0.141 4.141 14 C 0.002 3.998 15 F -0.165 7.165 16 C -0.136 4.136 17 C -0.161 4.161 18 H 0.291 0.709 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.145 0.855 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 0.221 -1.056 4.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.153 4.153 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.455 4.455 8 H 0.115 0.885 9 C 0.056 3.944 10 C -0.433 4.433 11 C 0.053 3.947 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.017 4.017 15 F -0.144 7.144 16 C -0.155 4.155 17 C -0.180 4.180 18 H 0.102 0.898 19 H 0.103 0.897 20 H 0.099 0.901 21 H 0.163 0.837 22 H 0.132 0.868 23 H 0.130 0.870 24 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.709 0.393 -1.059 3.877 hybrid contribution 0.484 0.692 -0.031 0.845 sum 4.193 1.085 -1.090 4.466 Atomic orbital electron populations 1.69504 1.08173 1.30875 1.32178 1.26453 0.94899 1.02697 0.91233 0.86167 0.80753 0.79321 0.80041 1.18633 1.19763 1.17749 1.20154 0.96432 0.90800 1.38103 0.88544 1.20535 0.95787 0.91787 0.86333 1.20981 0.96276 0.96288 1.29787 1.19018 0.93639 0.91258 0.90748 1.21727 0.94685 1.00859 0.98194 1.20899 0.95000 0.97327 1.02718 1.17578 0.80179 0.97908 1.06006 1.91343 1.38851 1.97070 1.87144 1.20715 0.97308 0.96927 1.00555 1.21041 0.92674 1.00470 1.03789 0.89832 0.89688 0.90061 0.83725 0.86847 0.87047 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.63 12.92 55.59 0.72 -17.91 14 2 C 0.07 1.61 5.51 -17.19 -0.09 1.51 14 3 Si 0.91 17.45 29.57 -169.99 -5.03 12.42 14 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 14 5 H -0.27 -5.04 7.11 56.52 0.40 -4.63 14 6 H -0.25 -4.90 7.11 56.52 0.40 -4.50 14 7 C -0.43 -10.54 6.50 -38.48 -0.25 -10.79 14 8 H 0.10 2.38 5.37 -52.49 -0.28 2.10 14 9 C 0.08 1.94 9.34 -39.38 -0.37 1.57 14 10 C -0.41 -10.05 9.99 -36.37 -0.36 -10.41 14 11 C 0.05 1.25 5.50 -105.04 -0.58 0.68 14 12 C -0.14 -3.08 7.56 -38.98 -0.29 -3.38 14 13 C -0.14 -2.93 10.00 -39.59 -0.40 -3.33 14 14 C 0.00 0.05 7.32 -39.14 -0.29 -0.24 14 15 F -0.16 -3.30 17.26 2.25 0.04 -3.26 14 16 C -0.14 -2.71 10.00 -39.58 -0.40 -3.11 14 17 C -0.16 -3.39 9.81 -38.98 -0.38 -3.78 14 18 H 0.29 6.19 8.29 -40.82 -0.34 5.85 14 19 H 0.09 2.18 7.53 -52.49 -0.40 1.78 14 20 H 0.08 1.90 8.06 -52.48 -0.42 1.48 14 21 H 0.15 3.33 5.65 -52.48 -0.30 3.03 14 22 H 0.11 2.10 8.06 -52.48 -0.42 1.67 14 23 H 0.11 1.91 8.06 -52.49 -0.42 1.49 14 24 H 0.11 2.15 8.06 -52.48 -0.42 1.73 14 LS Contribution 221.67 15.07 3.34 3.34 Total: -1.00 -25.06 221.67 -6.14 -31.19 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -1.80 Total: 5.48 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -3.41 Total: -31.27 kcal Atomic # 7 Polarization: -18.63 SS G_CDS: 0.72 Total: -17.91 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -25.06 -6.14 -31.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039088870.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.244 kcal (2) G-P(sol) polarization free energy of solvation -25.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds