Wall clock time and date at job start Mon Mar 30 2020 02:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 C 1.50698 * 109.47434 * 120.00390 * 2 1 3 5 5 H 1.07997 * 120.00391 * 119.99756 * 4 2 1 6 6 C 1.37886 * 119.99510 * 300.00017 * 4 2 1 7 7 N 1.31516 * 119.99631 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00209 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46916 * 89.99973 * 8 6 4 10 10 H 1.48495 * 109.47110 * 209.99945 * 8 6 4 11 11 H 1.48496 * 109.47145 * 329.99906 * 8 6 4 12 12 O 1.42899 * 109.47363 * 240.00407 * 2 1 3 13 13 C 1.35895 * 117.00268 * 84.96455 * 12 2 1 14 14 C 1.38739 * 120.05716 * 174.28386 * 13 12 2 15 15 C 1.38152 * 119.94189 * 179.74549 * 14 13 12 16 16 C 1.38264 * 120.05315 * 0.50561 * 15 14 13 17 17 C 1.38264 * 120.11746 * 359.76649 * 16 15 14 18 18 C 1.38145 * 120.05276 * 359.97438 * 17 16 15 19 19 H 1.09006 * 109.46597 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47036 * 60.00036 * 1 2 3 21 21 H 1.08997 * 109.47017 * 299.99641 * 1 2 3 22 22 H 0.96998 * 120.00000 * 179.97438 * 7 6 4 23 23 H 1.07994 * 120.02424 * 359.97438 * 14 13 12 24 24 H 1.08000 * 119.96706 * 180.23006 * 15 14 13 25 25 H 1.07998 * 119.94022 * 179.74661 * 16 15 14 26 26 H 1.07993 * 119.97553 * 179.97438 * 17 16 15 27 27 H 1.07998 * 120.02918 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1773 1.4924 12 8 2.0064 -0.6735 -1.1668 13 6 2.1119 0.0625 -2.3043 14 6 2.6779 -0.4940 -3.4421 15 6 2.7792 0.2547 -4.5987 16 6 2.3265 1.5609 -4.6198 17 6 1.7671 2.1198 -3.4856 18 6 1.6587 1.3736 -2.3281 19 1 -0.3633 -1.0278 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 1.9033 -0.5281 4.4375 23 1 3.0357 -1.5129 -3.4247 24 1 3.2164 -0.1794 -5.4858 25 1 2.4103 2.1459 -5.5238 26 1 1.4147 3.1404 -3.5045 27 1 1.2221 1.8106 -1.4422 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041167647.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:14 Heat of formation + Delta-G solvation = -11.844986 kcal Electronic energy + Delta-G solvation = -11612.430427 eV Core-core repulsion = 9528.783168 eV Total energy + Delta-G solvation = -2083.647259 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.52832 -36.91801 -33.27773 -31.07531 -30.27514 -29.08224 -25.27977 -22.87819 -22.01430 -20.37368 -17.71047 -16.63745 -15.80059 -15.28330 -14.51799 -14.35799 -13.97625 -13.20066 -12.85581 -12.63961 -12.26006 -11.92091 -11.69938 -11.25228 -10.94252 -10.58420 -10.33757 -10.05248 -9.75305 -9.17569 -8.74767 -8.64365 -7.61121 -6.24927 -4.26895 1.68853 1.87656 3.13729 3.21183 3.26105 4.13463 4.20816 4.22362 5.05044 5.19651 5.25438 5.45272 5.71533 5.82013 5.99630 6.06822 6.21857 6.32286 6.37824 6.49024 6.72277 6.82072 6.83989 7.08927 7.21095 7.45135 8.04747 8.53425 8.84631 9.32113 10.87643 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.062330 B = 0.010551 C = 0.009587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.115219 B = 2653.196372 C = 2919.807868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.184 3.816 3 H 0.033 0.967 4 C -0.521 4.521 5 H 0.087 0.913 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.884 3.116 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.267 1.267 12 O -0.299 6.299 13 C 0.152 3.848 14 C -0.168 4.168 15 C -0.084 4.084 16 C -0.180 4.180 17 C -0.082 4.082 18 C -0.217 4.217 19 H 0.065 0.935 20 H 0.038 0.962 21 H 0.054 0.946 22 H 0.269 0.731 23 H 0.126 0.874 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 5.268 -12.032 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.129 3.871 3 H 0.050 0.950 4 C -0.559 4.559 5 H 0.105 0.895 6 C -0.125 4.125 7 N -0.525 5.525 8 Si 0.713 3.287 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.192 1.192 12 O -0.212 6.212 13 C 0.104 3.896 14 C -0.187 4.187 15 C -0.102 4.102 16 C -0.199 4.199 17 C -0.100 4.100 18 C -0.236 4.236 19 H 0.084 0.916 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.144 0.856 24 H 0.139 0.861 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.796 5.045 -11.752 12.915 hybrid contribution -0.741 1.009 0.357 1.302 sum -2.537 6.054 -11.396 13.151 Atomic orbital electron populations 1.22699 0.99135 1.02307 0.99589 1.20606 0.90319 0.93930 0.82282 0.94996 1.20765 1.33118 1.14839 0.87192 0.89524 1.24763 0.95681 0.96767 0.95273 1.69841 1.44755 1.39923 0.98006 0.86917 0.80831 0.83421 0.77526 1.20002 1.21690 1.19216 1.86187 1.79660 1.38702 1.16608 1.19307 0.92199 0.90205 0.87912 1.20463 1.05148 1.01316 0.91740 1.20853 0.98388 0.94088 0.96908 1.20878 1.04451 0.96058 0.98471 1.20890 0.97591 0.99009 0.92557 1.21471 1.07203 0.94962 0.99972 0.91577 0.94295 0.92782 0.92060 0.85577 0.86114 0.86715 0.86528 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.98 8.65 37.16 0.32 -3.66 15 2 C 0.18 4.52 1.81 -27.88 -0.05 4.47 15 3 H 0.03 0.79 5.37 -51.93 -0.28 0.51 15 4 C -0.52 -14.98 9.47 -34.44 -0.33 -15.31 15 5 H 0.09 2.73 8.06 -52.49 -0.42 2.30 15 6 C 0.08 2.23 5.45 -17.82 -0.10 2.13 15 7 N -0.89 -26.71 13.96 55.43 0.77 -25.94 15 8 Si 0.88 21.17 24.37 -169.99 -4.14 17.02 15 9 H -0.27 -6.32 6.87 56.52 0.39 -5.93 15 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 11 H -0.27 -6.06 6.53 56.52 0.37 -5.69 15 12 O -0.30 -7.06 9.78 -19.41 -0.19 -7.25 15 13 C 0.15 3.04 6.60 -39.21 -0.26 2.78 15 14 C -0.17 -2.88 9.99 -39.43 -0.39 -3.27 15 15 C -0.08 -1.20 10.04 -39.60 -0.40 -1.60 15 16 C -0.18 -2.50 10.04 -39.56 -0.40 -2.90 15 17 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 15 18 C -0.22 -3.99 8.24 -39.43 -0.33 -4.32 15 19 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 20 H 0.04 0.75 6.91 -51.93 -0.36 0.39 15 21 H 0.05 1.20 3.27 -51.93 -0.17 1.03 15 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 23 H 0.13 2.00 8.06 -52.49 -0.42 1.58 15 24 H 0.12 1.34 8.06 -52.49 -0.42 0.91 15 25 H 0.11 1.26 8.06 -52.49 -0.42 0.84 15 26 H 0.12 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.13 2.43 5.43 -52.49 -0.29 2.15 15 LS Contribution 226.68 15.07 3.42 3.42 Total: -1.00 -29.96 226.68 -5.28 -35.23 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -2.81 Total: 0.84 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -2.32 Total: -23.32 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.19 Total: -7.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.96 -5.28 -35.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041167647.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.388 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds