Wall clock time and date at job start Mon Mar 30 2020 02:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47157 * 2 1 4 4 C 1.50698 * 109.47434 * 120.00390 * 2 1 3 5 5 H 1.07997 * 120.00391 * 119.99756 * 4 2 1 6 6 C 1.37886 * 119.99510 * 300.00017 * 4 2 1 7 7 N 1.31516 * 119.99631 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00209 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46916 * 89.99973 * 8 6 4 10 10 H 1.48495 * 109.47110 * 209.99945 * 8 6 4 11 11 H 1.48496 * 109.47145 * 329.99906 * 8 6 4 12 12 O 1.42899 * 109.47363 * 240.00407 * 2 1 3 13 13 C 1.35895 * 117.00268 * 84.96455 * 12 2 1 14 14 C 1.38739 * 120.05716 * 174.28386 * 13 12 2 15 15 C 1.38152 * 119.94189 * 179.74549 * 14 13 12 16 16 C 1.38264 * 120.05315 * 0.50561 * 15 14 13 17 17 C 1.38264 * 120.11746 * 359.76649 * 16 15 14 18 18 C 1.38145 * 120.05276 * 359.97438 * 17 16 15 19 19 H 1.09006 * 109.46597 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47036 * 60.00036 * 1 2 3 21 21 H 1.08997 * 109.47017 * 299.99641 * 1 2 3 22 22 H 0.96998 * 120.00000 * 179.97438 * 7 6 4 23 23 H 1.07994 * 120.02424 * 359.97438 * 14 13 12 24 24 H 1.08000 * 119.96706 * 180.23006 * 15 14 13 25 25 H 1.07998 * 119.94022 * 179.74661 * 16 15 14 26 26 H 1.07993 * 119.97553 * 179.97438 * 17 16 15 27 27 H 1.07998 * 120.02918 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1773 1.4924 12 8 2.0064 -0.6735 -1.1668 13 6 2.1119 0.0625 -2.3043 14 6 2.6779 -0.4940 -3.4421 15 6 2.7792 0.2547 -4.5987 16 6 2.3265 1.5609 -4.6198 17 6 1.7671 2.1198 -3.4856 18 6 1.6587 1.3736 -2.3281 19 1 -0.3633 -1.0278 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 1.9033 -0.5281 4.4375 23 1 3.0357 -1.5129 -3.4247 24 1 3.2164 -0.1794 -5.4858 25 1 2.4103 2.1459 -5.5238 26 1 1.4147 3.1404 -3.5045 27 1 1.2221 1.8106 -1.4422 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041167647.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:13 Heat of formation + Delta-G solvation = -31.543767 kcal Electronic energy + Delta-G solvation = -11613.284630 eV Core-core repulsion = 9528.783168 eV Total energy + Delta-G solvation = -2084.501463 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.99738 -38.37975 -35.31484 -32.86061 -31.65384 -30.44949 -27.33046 -24.40573 -23.33530 -21.99018 -19.37272 -18.58745 -17.45736 -16.65850 -16.15727 -15.99092 -15.34443 -14.87333 -14.42617 -14.31858 -13.87006 -13.53278 -13.33231 -12.87151 -12.38285 -12.32269 -11.92647 -11.72574 -11.55620 -11.17660 -10.86190 -9.88065 -9.01712 -8.44567 -6.54196 0.45864 0.59962 1.24483 1.29734 1.40726 2.19854 2.57771 2.87439 2.94390 3.99239 4.06520 4.18998 4.34087 4.40197 4.45292 4.57619 4.62952 4.73346 4.85834 5.15182 5.27234 5.34561 5.52215 5.60315 5.64544 5.90152 6.10525 6.49452 6.81330 7.11167 8.72455 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.062330 B = 0.010551 C = 0.009587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.115219 B = 2653.196372 C = 2919.807868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.191 3.809 3 H 0.035 0.965 4 C -0.544 4.544 5 H 0.033 0.967 6 C 0.024 3.976 7 N -0.937 5.937 8 Si 0.951 3.049 9 H -0.254 1.254 10 H -0.285 1.285 11 H -0.244 1.244 12 O -0.331 6.331 13 C 0.106 3.894 14 C -0.181 4.181 15 C -0.077 4.077 16 C -0.166 4.166 17 C -0.082 4.082 18 C -0.233 4.233 19 H 0.058 0.942 20 H 0.067 0.933 21 H 0.056 0.944 22 H 0.275 0.725 23 H 0.126 0.874 24 H 0.159 0.841 25 H 0.157 0.843 26 H 0.149 0.851 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 7.851 -14.537 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.135 3.865 3 H 0.052 0.948 4 C -0.581 4.581 5 H 0.052 0.948 6 C -0.175 4.175 7 N -0.575 5.575 8 Si 0.775 3.225 9 H -0.179 1.179 10 H -0.211 1.211 11 H -0.168 1.168 12 O -0.246 6.246 13 C 0.060 3.940 14 C -0.200 4.200 15 C -0.095 4.095 16 C -0.184 4.184 17 C -0.100 4.100 18 C -0.252 4.252 19 H 0.077 0.923 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.144 0.856 24 H 0.177 0.823 25 H 0.174 0.826 26 H 0.166 0.834 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.885 7.623 -14.294 16.454 hybrid contribution -0.273 0.149 0.971 1.020 sum -3.158 7.772 -13.322 15.744 Atomic orbital electron populations 1.22566 0.97024 1.02361 1.01018 1.20315 0.91762 0.93056 0.81357 0.94795 1.21013 1.33134 1.13895 0.90077 0.94818 1.25731 0.96997 1.00450 0.94365 1.69993 1.46439 1.42196 0.98857 0.85831 0.79331 0.78985 0.78375 1.17912 1.21142 1.16770 1.86098 1.81023 1.39887 1.17543 1.19721 0.95321 0.91480 0.87489 1.20733 1.05203 1.01957 0.92114 1.21314 0.97155 0.94194 0.96801 1.21419 1.01706 0.95895 0.99335 1.21294 0.96852 1.00166 0.91674 1.21535 1.07950 0.94538 1.01143 0.92331 0.91364 0.92563 0.91580 0.85614 0.82343 0.82586 0.83371 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.48 8.65 71.98 0.62 -6.86 15 2 C 0.19 9.56 1.81 29.85 0.05 9.61 15 3 H 0.03 1.68 5.37 -2.39 -0.01 1.66 15 4 C -0.54 -32.83 9.47 25.60 0.24 -32.59 15 5 H 0.03 2.30 8.06 -2.91 -0.02 2.28 15 6 C 0.02 1.38 5.45 84.66 0.46 1.84 15 7 N -0.94 -58.43 13.96 21.45 0.30 -58.13 15 8 Si 0.95 43.21 24.37 68.60 1.67 44.88 15 9 H -0.25 -10.73 6.87 99.48 0.68 -10.04 15 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 11 H -0.24 -10.13 6.53 99.48 0.65 -9.48 15 12 O -0.33 -16.27 9.78 -92.37 -0.90 -17.17 15 13 C 0.11 4.24 6.60 22.51 0.15 4.39 15 14 C -0.18 -6.04 9.99 22.37 0.22 -5.81 15 15 C -0.08 -1.91 10.04 22.26 0.22 -1.68 15 16 C -0.17 -3.77 10.04 22.28 0.22 -3.54 15 17 C -0.08 -2.17 10.04 22.25 0.22 -1.95 15 18 C -0.23 -8.17 8.24 22.37 0.18 -7.98 15 19 H 0.06 2.57 8.14 -2.38 -0.02 2.55 15 20 H 0.07 2.52 6.91 -2.39 -0.02 2.50 15 21 H 0.06 2.38 3.27 -2.39 -0.01 2.37 15 22 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 23 H 0.13 4.03 8.06 -2.91 -0.02 4.00 15 24 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 25 H 0.16 2.34 8.06 -2.91 -0.02 2.31 15 26 H 0.15 2.95 8.06 -2.91 -0.02 2.93 15 27 H 0.12 4.34 5.43 -2.91 -0.02 4.33 15 Total: -1.00 -68.60 226.68 4.75 -63.85 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.08 Total: 11.15 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 2.61 Total: -44.58 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.90 Total: -17.17 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.67 Total: 44.88 kcal Total: -68.60 4.75 -63.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041167647.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.304 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds