Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00242 * 2 1 4 4 C 1.38738 * 111.00051 * 236.03885 * 2 1 3 5 5 C 1.38754 * 120.28870 * 60.00817 * 4 2 1 6 6 C 1.38169 * 120.02201 * 180.02562 * 5 4 2 7 7 C 1.38902 * 120.62350 * 359.97438 * 6 5 4 8 8 C 1.36440 * 120.60100 * 359.97438 * 7 6 5 9 9 C 1.40735 * 119.95293 * 359.72616 * 8 7 6 10 10 C 1.41042 * 120.30761 * 180.27872 * 9 8 7 11 11 H 1.07999 * 119.99594 * 204.82697 * 10 9 8 12 12 C 1.39928 * 120.00403 * 24.82671 * 10 9 8 13 13 N 1.30879 * 119.99897 * 17.60149 * 12 10 9 14 14 Si 1.86801 * 120.00075 * 197.60656 * 12 10 9 15 15 H 1.48502 * 109.46945 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47180 * 119.99443 * 14 12 10 17 17 H 1.48503 * 109.46866 * 239.99752 * 14 12 10 18 18 H 1.09003 * 109.47324 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.46598 * 60.00495 * 1 2 3 20 20 H 1.08997 * 109.47284 * 300.00899 * 1 2 3 21 21 H 1.08992 * 109.47503 * 59.99591 * 3 2 1 22 22 H 1.08997 * 109.47276 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.46622 * 299.99582 * 3 2 1 24 24 H 1.07994 * 119.99222 * 0.02562 * 5 4 2 25 25 H 1.07991 * 119.68711 * 179.97438 * 6 5 4 26 26 H 1.07999 * 119.69467 * 179.97438 * 7 6 5 27 27 H 1.07999 * 120.02446 * 179.97438 * 8 7 6 28 28 H 0.96999 * 120.00025 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9662 -0.7236 -1.0743 5 6 1.6578 -0.3477 -2.3739 6 6 2.1556 -1.0726 -3.4397 7 6 2.9665 -2.1798 -3.2252 8 6 3.2866 -2.5712 -1.9580 9 6 2.7984 -1.8471 -0.8544 10 6 3.1294 -2.2417 0.4586 11 1 2.4809 -1.9787 1.2811 12 6 4.2981 -2.9739 0.6955 13 7 5.2469 -3.0018 -0.2056 14 14 4.5040 -3.9117 2.2979 15 1 3.2977 -3.7195 3.1424 16 1 4.6795 -5.3572 2.0064 17 1 5.6986 -3.4034 3.0189 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 0.5139 0.8899 21 1 1.6460 1.8948 0.8899 22 1 3.0851 1.3423 -0.0005 23 1 1.6460 1.8947 -0.8901 24 1 1.0286 0.5116 -2.5525 25 1 1.9118 -0.7756 -4.4489 26 1 3.3470 -2.7358 -4.0693 27 1 3.9176 -3.4338 -1.8020 28 1 6.0568 -3.5096 -0.0415 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368215.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = 10.371838 kcal Electronic energy + Delta-G solvation = -11732.809081 eV Core-core repulsion = 9747.843877 eV Total energy + Delta-G solvation = -1984.965203 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.13787 -37.05971 -35.43492 -31.55531 -30.34230 -28.30828 -27.16508 -24.89985 -22.74956 -21.19797 -19.13898 -17.46583 -16.79260 -15.93344 -15.81801 -15.64191 -14.66901 -14.49297 -14.17428 -13.39289 -13.18626 -12.95515 -12.80668 -12.66417 -12.51768 -12.41941 -12.13734 -11.58128 -11.35606 -11.00257 -9.31009 -9.17368 -9.01507 -8.56944 -6.21886 0.96299 1.07702 1.41066 1.54282 1.56892 2.25334 2.77520 3.41841 3.73851 4.35689 4.46832 4.52181 4.57926 4.68887 4.73801 4.84239 5.01891 5.02637 5.20803 5.32684 5.52612 5.58886 5.92390 6.04597 6.21137 6.38616 6.43371 6.58598 6.87127 7.02358 7.30155 8.37422 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.034939 B = 0.015305 C = 0.011703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.212165 B = 1828.970843 C = 2391.873115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.504 5.504 3 C 0.042 3.958 4 C -0.048 4.048 5 C -0.120 4.120 6 C -0.241 4.241 7 C -0.112 4.112 8 C -0.186 4.186 9 C 0.095 3.905 10 C -0.459 4.459 11 H 0.079 0.921 12 C 0.031 3.969 13 N -0.826 5.826 14 Si 0.980 3.020 15 H -0.259 1.259 16 H -0.265 1.265 17 H -0.268 1.268 18 H 0.049 0.951 19 H 0.025 0.975 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.042 0.958 23 H 0.025 0.975 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 2.663 1.159 5.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.224 5.224 3 C -0.105 4.105 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.261 4.261 7 C -0.130 4.130 8 C -0.206 4.206 9 C 0.092 3.908 10 C -0.488 4.488 11 H 0.097 0.903 12 C -0.183 4.183 13 N -0.453 5.453 14 Si 0.801 3.199 15 H -0.183 1.183 16 H -0.190 1.190 17 H -0.193 1.193 18 H 0.068 0.932 19 H 0.044 0.956 20 H 0.101 0.899 21 H 0.101 0.899 22 H 0.061 0.939 23 H 0.043 0.957 24 H 0.124 0.876 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.684 2.370 1.575 4.655 hybrid contribution 0.143 -0.044 -0.353 0.383 sum -3.542 2.326 1.222 4.410 Atomic orbital electron populations 1.22362 0.86737 1.01192 1.00616 1.58853 1.07702 1.13114 1.42734 1.22292 0.99536 0.88124 1.00505 1.18744 1.08554 0.98615 0.88385 1.21237 1.00183 0.99133 0.93456 1.20555 1.07015 1.00810 0.97705 1.20710 0.98453 0.97535 0.96317 1.21048 1.05242 1.01844 0.92483 1.17879 0.89786 0.89112 0.94025 1.19679 1.05790 1.29035 0.94329 0.90281 1.26820 0.94366 0.95223 1.01933 1.69920 1.05553 1.33036 1.36760 0.85189 0.79088 0.78148 0.77446 1.18298 1.18973 1.19254 0.93166 0.95625 0.89946 0.89877 0.93896 0.95698 0.87604 0.86847 0.87362 0.87953 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 9.28 127.69 1.18 2.53 15 2 N -0.50 -21.82 4.18 -743.47 -3.10 -24.93 15 3 C 0.04 1.57 9.32 127.69 1.19 2.76 15 4 C -0.05 -2.35 4.72 38.99 0.18 -2.17 15 5 C -0.12 -5.41 8.64 22.38 0.19 -5.22 15 6 C -0.24 -10.76 10.04 22.41 0.22 -10.54 15 7 C -0.11 -5.34 9.96 22.01 0.22 -5.12 15 8 C -0.19 -10.05 8.64 22.46 0.19 -9.85 15 9 C 0.10 5.26 5.59 -21.17 -0.12 5.14 15 10 C -0.46 -25.27 8.69 23.37 0.20 -25.07 15 11 H 0.08 4.35 7.59 -2.91 -0.02 4.33 15 12 C 0.03 1.58 5.14 85.24 0.44 2.02 15 13 N -0.83 -43.90 10.97 21.83 0.24 -43.66 15 14 Si 0.98 39.23 29.59 68.60 2.03 41.26 15 15 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 16 H -0.27 -10.14 7.11 99.48 0.71 -9.44 15 17 H -0.27 -10.27 7.11 99.48 0.71 -9.57 15 18 H 0.05 1.86 8.12 -2.39 -0.02 1.85 15 19 H 0.03 0.84 7.26 -2.38 -0.02 0.82 15 20 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 22 H 0.04 1.75 8.12 -2.39 -0.02 1.73 15 23 H 0.02 0.85 7.47 -2.39 -0.02 0.83 15 24 H 0.11 4.21 7.07 -2.91 -0.02 4.19 15 25 H 0.11 4.33 8.06 -2.92 -0.02 4.31 15 26 H 0.11 4.54 8.06 -2.91 -0.02 4.52 15 27 H 0.10 5.74 6.17 -2.91 -0.02 5.72 15 28 H 0.29 13.72 8.30 -92.71 -0.77 12.95 15 Total: -1.00 -59.47 238.56 4.21 -55.26 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.13 Total: 17.59 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 3.91 Total: -45.52 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -2.86 Total: -68.59 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -59.47 4.21 -55.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368215.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.627 kcal (2) G-P(sol) polarization free energy of solvation -59.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds