Wall clock time and date at job start Mon Mar 30 2020 02:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.55450 * 2 1 4 4 C 1.52997 * 117.51528 * 214.29273 * 2 1 3 5 5 C 1.53000 * 60.00347 * 252.52230 * 4 2 1 6 6 H 1.08990 * 117.49990 * 252.50929 * 5 4 2 7 7 C 1.50697 * 117.49504 * 107.48912 * 5 4 2 8 8 C 1.35664 * 125.39119 * 171.38246 * 7 5 4 9 9 C 1.39759 * 107.35020 * 179.97438 * 8 7 5 10 10 C 1.39549 * 106.46038 * 359.97438 * 9 8 7 11 11 C 1.39745 * 126.20818 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00106 * 179.97438 * 11 10 9 13 13 C 1.40158 * 119.99722 * 359.97438 * 11 10 9 14 14 N 1.30804 * 120.00622 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99829 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47047 * 89.99510 * 15 13 11 17 17 H 1.48494 * 109.47227 * 209.99869 * 15 13 11 18 18 H 1.48508 * 109.46887 * 329.99703 * 15 13 11 19 19 O 1.34244 * 125.39543 * 351.07234 * 7 5 4 20 20 H 1.09004 * 109.46885 * 274.33679 * 1 2 3 21 21 H 1.09001 * 109.46454 * 34.32691 * 1 2 3 22 22 H 1.08998 * 109.47494 * 154.32834 * 1 2 3 23 23 H 1.09002 * 117.49910 * 145.03371 * 4 2 1 24 24 H 1.09002 * 117.49884 * 0.02562 * 4 2 1 25 25 H 1.07998 * 126.32449 * 359.97438 * 8 7 5 26 26 H 1.08005 * 126.77066 * 180.02562 * 9 8 7 27 27 H 0.96997 * 120.00067 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2368 -1.1210 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 3.1712 -0.8748 1.2690 7 6 1.3719 -2.1404 1.4611 8 6 1.3737 -2.3939 2.7939 9 6 0.4338 -3.4015 3.0278 10 6 -0.1156 -3.7256 1.7866 11 6 -1.1005 -4.6872 1.5455 12 1 -1.4551 -4.8565 0.5395 13 6 -1.6280 -5.4319 2.6093 14 7 -1.1982 -5.2272 3.8276 15 14 -2.9441 -6.7179 2.2869 16 1 -2.2999 -8.0280 2.0151 17 1 -3.8230 -6.8360 3.4780 18 1 -3.7555 -6.3118 1.1113 19 8 0.4738 -2.9376 0.8610 20 1 -0.3633 0.0777 1.0248 21 1 -0.3632 0.8487 -0.5795 22 1 -0.3634 -0.9262 -0.4452 23 1 3.1721 -0.8752 -1.2676 24 1 1.6118 -1.8586 -1.2680 25 1 1.9880 -1.9070 3.5369 26 1 0.1817 -3.8418 3.9812 27 1 -1.5630 -5.7429 4.5636 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051952483.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:24 Heat of formation + Delta-G solvation = -0.923870 kcal Electronic energy + Delta-G solvation = -11629.484999 eV Core-core repulsion = 9546.311315 eV Total energy + Delta-G solvation = -2083.173684 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.41383 -38.41466 -35.83133 -32.91707 -30.85035 -29.42765 -27.04681 -23.36168 -21.99752 -21.71050 -20.16704 -19.41888 -17.33950 -16.79369 -16.19942 -15.81067 -15.13568 -14.07220 -13.97824 -13.81510 -13.42934 -13.27865 -13.00586 -12.96354 -12.31830 -12.28667 -12.01740 -11.73967 -11.45117 -11.18425 -10.83454 -10.03948 -8.97706 -8.62978 -6.40944 1.15009 1.36585 1.53813 1.61309 2.14627 2.28532 2.85648 3.12569 3.19552 3.86127 3.91424 4.16346 4.49334 4.65552 4.75105 4.85902 4.90572 5.00271 5.04363 5.11761 5.20681 5.32859 5.49858 5.68127 5.95703 6.09373 6.47859 6.66147 6.76105 7.24555 8.29792 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.063759 B = 0.009914 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.047033 B = 2823.498537 C = 3033.751945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.139 4.139 3 H 0.140 0.860 4 C -0.167 4.167 5 C -0.072 4.072 6 H 0.139 0.861 7 C -0.109 4.109 8 C -0.190 4.190 9 C -0.363 4.363 10 C 0.134 3.866 11 C -0.473 4.473 12 H 0.080 0.920 13 C 0.024 3.976 14 N -0.821 5.821 15 Si 1.015 2.985 16 H -0.258 1.258 17 H -0.260 1.260 18 H -0.256 1.256 19 O -0.222 6.222 20 H 0.037 0.963 21 H 0.082 0.918 22 H 0.031 0.969 23 H 0.127 0.873 24 H 0.071 0.929 25 H 0.134 0.866 26 H 0.145 0.855 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 4.819 -4.535 6.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.157 4.157 3 H 0.157 0.843 4 C -0.204 4.204 5 C -0.090 4.090 6 H 0.157 0.843 7 C -0.157 4.157 8 C -0.209 4.209 9 C -0.385 4.385 10 C 0.084 3.916 11 C -0.503 4.503 12 H 0.098 0.902 13 C -0.189 4.189 14 N -0.449 5.449 15 Si 0.833 3.167 16 H -0.182 1.182 17 H -0.184 1.184 18 H -0.180 1.180 19 O -0.124 6.124 20 H 0.056 0.944 21 H 0.101 0.899 22 H 0.050 0.950 23 H 0.145 0.855 24 H 0.090 0.910 25 H 0.152 0.848 26 H 0.162 0.838 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.884 4.778 -4.602 6.896 hybrid contribution -0.420 -0.662 0.480 0.920 sum 1.464 4.115 -4.122 6.005 Atomic orbital electron populations 1.21256 0.94092 1.01261 1.00768 1.22588 0.94936 0.94882 1.03314 0.84279 1.23134 1.03308 1.01080 0.92867 1.20461 0.98471 0.96170 0.93885 0.84293 1.21302 1.00782 1.02002 0.91579 1.21351 1.02695 1.01502 0.95383 1.22447 1.08256 1.08380 0.99380 1.20153 0.93941 0.91199 0.86315 1.18767 1.18150 1.16723 0.96669 0.90170 1.26918 0.99433 0.99338 0.93229 1.69824 1.37801 1.36039 1.01208 0.84723 0.76147 0.76450 0.79351 1.18192 1.18420 1.17998 1.83891 1.46214 1.43971 1.38289 0.94439 0.89919 0.95016 0.85482 0.91043 0.84785 0.83806 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 9.15 71.98 0.66 -3.33 15 2 C -0.14 -4.23 6.41 -10.79 -0.07 -4.30 15 3 H 0.14 3.16 8.14 -2.39 -0.02 3.14 15 4 C -0.17 -5.21 9.81 30.59 0.30 -4.91 15 5 C -0.07 -2.62 6.23 -11.54 -0.07 -2.69 15 6 H 0.14 4.24 8.14 -2.39 -0.02 4.22 15 7 C -0.11 -5.40 5.91 25.09 0.15 -5.25 15 8 C -0.19 -9.94 10.75 22.04 0.24 -9.71 15 9 C -0.36 -21.74 9.83 22.95 0.23 -21.51 15 10 C 0.13 8.15 7.02 22.95 0.16 8.31 15 11 C -0.47 -27.60 9.44 23.10 0.22 -27.39 15 12 H 0.08 4.45 7.85 -2.91 -0.02 4.43 15 13 C 0.02 1.28 5.50 85.31 0.47 1.75 15 14 N -0.82 -44.98 10.25 21.87 0.22 -44.75 15 15 Si 1.02 39.15 29.56 68.60 2.03 41.17 15 16 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 17 H -0.26 -9.31 7.11 99.48 0.71 -8.61 15 18 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 19 O -0.22 -12.57 9.59 -9.83 -0.09 -12.66 15 20 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.03 1.25 7.24 -2.39 -0.02 1.23 15 23 H 0.13 2.97 8.14 -2.39 -0.02 2.96 15 24 H 0.07 2.60 7.85 -2.39 -0.02 2.58 15 25 H 0.13 6.10 8.06 -2.91 -0.02 6.07 15 26 H 0.14 8.93 5.70 -2.91 -0.02 8.91 15 27 H 0.29 14.08 8.30 -92.71 -0.77 13.31 15 Total: -1.00 -66.63 236.45 5.59 -61.04 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 1.16 Total: 24.22 kcal Atomic # 6 Polarization: -71.30 SS G_CDS: 2.28 Total: -69.02 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.22 Total: -44.75 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.09 Total: -12.66 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.17 kcal Total: -66.63 5.59 -61.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051952483.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.114 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds