Wall clock time and date at job start Mon Mar 30 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00415 * 2 1 4 4 H 1.09006 * 109.46723 * 35.80460 * 3 2 1 5 5 C 1.50702 * 109.47262 * 155.80208 * 3 2 1 6 6 H 1.08001 * 119.99520 * 119.99753 * 5 3 2 7 7 C 1.37870 * 120.00086 * 300.00334 * 5 3 2 8 8 N 1.31516 * 120.00243 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00041 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46878 * 59.99922 * 9 7 5 11 11 H 1.48494 * 109.47280 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47209 * 300.00416 * 9 7 5 13 13 C 1.50695 * 109.47246 * 275.80690 * 3 2 1 14 14 C 1.38234 * 120.00122 * 313.16532 * 13 3 2 15 15 C 1.38237 * 120.00244 * 179.80955 * 14 13 3 16 16 C 1.38227 * 119.99830 * 0.40138 * 15 14 13 17 17 C 1.38236 * 120.00130 * 359.84918 * 16 15 14 18 18 C 1.38233 * 120.00208 * 133.43892 * 13 3 2 19 19 H 1.09000 * 109.47283 * 304.57722 * 1 2 3 20 20 H 1.09000 * 109.47279 * 64.57624 * 1 2 3 21 21 H 1.08996 * 109.47593 * 184.57711 * 1 2 3 22 22 H 1.00902 * 110.99819 * 236.04556 * 2 1 3 23 23 H 0.96998 * 119.99872 * 179.97438 * 8 7 5 24 24 H 1.08006 * 119.99929 * 359.97438 * 14 13 3 25 25 H 1.07999 * 120.00174 * 180.22501 * 15 14 13 26 26 H 1.08007 * 120.00192 * 179.83376 * 16 15 14 27 27 H 1.08007 * 120.00035 * 179.97438 * 17 16 15 28 28 H 1.07997 * 119.99996 * 359.97438 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3476 2.0092 0.6013 5 6 3.3854 1.3758 0.5824 6 1 4.2186 1.7210 -0.0118 7 6 3.5933 0.9392 1.8735 8 7 2.5785 0.5193 2.5971 9 14 5.3163 0.9441 2.5951 10 1 5.8490 2.3302 2.5950 11 1 5.2711 0.4307 3.9878 12 1 6.1985 0.0747 1.7759 13 6 2.0413 1.8918 -1.4135 14 6 2.5708 1.1083 -2.4217 15 6 2.6093 1.5842 -3.7190 16 6 2.1259 2.8468 -4.0066 17 6 1.6012 3.6325 -2.9975 18 6 1.5591 3.1550 -1.7009 19 1 -0.3634 0.5832 0.8461 20 1 -0.3634 0.4412 -0.9281 21 1 -0.3634 -1.0243 0.0820 22 1 1.8305 -0.5261 -0.7814 23 1 2.7249 0.2117 3.5053 24 1 2.9520 0.1232 -2.1964 25 1 3.0196 0.9706 -4.5074 26 1 2.1584 3.2198 -5.0197 27 1 1.2239 4.6192 -3.2221 28 1 1.1491 3.7688 -0.9125 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014746.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:02 Heat of formation + Delta-G solvation = 26.352393 kcal Electronic energy + Delta-G solvation = -11582.502527 eV Core-core repulsion = 9598.230293 eV Total energy + Delta-G solvation = -1984.272235 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.70673 -35.17539 -31.99116 -30.41329 -30.17089 -26.78423 -23.75783 -22.66755 -21.66422 -19.83305 -16.50889 -16.32283 -14.78965 -14.39607 -14.22644 -13.78468 -13.01026 -12.83132 -12.57679 -12.04506 -11.93207 -11.42093 -11.00295 -10.86377 -10.72001 -10.48908 -10.23776 -9.68949 -9.22187 -8.37835 -8.31332 -7.90259 -6.87323 -5.85086 -3.98330 2.01402 2.07177 3.37946 3.42263 3.45345 4.42266 4.56863 5.32833 5.44899 5.50078 5.60763 5.90829 5.92921 6.19301 6.22106 6.33776 6.42938 6.60413 6.73153 6.80638 7.05696 7.09354 7.14620 7.52461 7.67933 7.95607 8.24070 8.62459 8.80442 9.15072 9.69355 11.19801 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.012447 C = 0.010785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.973922 B = 2249.085681 C = 2595.524037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.651 5.651 3 C 0.250 3.750 4 H 0.043 0.957 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.085 3.915 8 N -0.852 5.852 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.068 4.068 14 C -0.118 4.118 15 C -0.126 4.126 16 C -0.149 4.149 17 C -0.126 4.126 18 C -0.124 4.124 19 H 0.056 0.944 20 H -0.007 1.007 21 H 0.043 0.957 22 H 0.313 0.687 23 H 0.256 0.744 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 2.114 -8.352 8.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.280 5.280 3 C 0.142 3.858 4 H 0.061 0.939 5 C -0.561 4.561 6 H 0.072 0.928 7 C -0.121 4.121 8 N -0.487 5.487 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.070 4.070 14 C -0.137 4.137 15 C -0.144 4.144 16 C -0.167 4.167 17 C -0.144 4.144 18 C -0.143 4.143 19 H 0.075 0.925 20 H 0.011 0.989 21 H 0.062 0.938 22 H 0.131 0.869 23 H 0.066 0.934 24 H 0.138 0.862 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.099 1.948 -7.451 7.982 hybrid contribution 0.768 0.267 -0.531 0.972 sum -1.330 2.215 -7.982 8.390 Atomic orbital electron populations 1.22082 0.91649 0.99595 0.98050 1.60991 1.03772 1.15992 1.47216 1.18396 0.96717 0.85774 0.84873 0.93897 1.20815 0.91893 1.45414 0.98026 0.92838 1.24914 0.96116 0.94270 0.96840 1.70057 1.29792 1.40180 1.08622 0.86797 0.85491 0.78241 0.78118 1.20433 1.21372 1.20316 1.21576 0.92580 0.93651 0.99222 1.21013 0.99833 1.00513 0.92308 1.21042 1.00669 0.96074 0.96580 1.20896 1.02074 0.95261 0.98465 1.21036 1.00682 0.99167 0.93511 1.21120 1.00959 0.96288 0.95936 0.92497 0.98860 0.93791 0.86903 0.93397 0.86232 0.87127 0.87307 0.87178 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.52 60.06 0.63 1.40 15 2 N -0.65 -15.53 5.90 -116.50 -0.69 -16.21 15 3 C 0.25 6.23 2.08 -70.02 -0.15 6.08 15 4 H 0.04 1.17 7.54 -51.93 -0.39 0.78 15 5 C -0.52 -14.41 8.66 -34.44 -0.30 -14.70 15 6 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 7 C 0.09 2.37 5.39 -17.82 -0.10 2.28 15 8 N -0.85 -24.67 12.77 55.43 0.71 -23.96 15 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 15 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 13 C -0.07 -1.47 4.67 -104.63 -0.49 -1.96 15 14 C -0.12 -2.33 8.95 -39.58 -0.35 -2.68 15 15 C -0.13 -2.13 10.05 -39.59 -0.40 -2.52 15 16 C -0.15 -2.39 10.05 -39.59 -0.40 -2.79 15 17 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 15 18 C -0.12 -2.43 9.67 -39.58 -0.38 -2.82 15 19 H 0.06 1.24 7.94 -51.93 -0.41 0.83 15 20 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 15 21 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.31 6.98 6.79 -39.29 -0.27 6.71 15 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 24 H 0.12 2.32 6.91 -52.48 -0.36 1.96 15 25 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.11 1.42 8.06 -52.48 -0.42 1.00 15 27 H 0.11 1.53 8.06 -52.48 -0.42 1.11 15 28 H 0.11 2.15 7.99 -52.49 -0.42 1.73 15 LS Contribution 243.19 15.07 3.66 3.66 Total: -1.00 -29.26 243.19 -7.16 -36.42 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.50 Total: 3.91 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -2.33 Total: -20.23 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.02 Total: -40.18 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.26 -7.16 -36.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014746.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.775 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds