Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48503 * 109.47049 * 269.99801 * 3 2 1 5 5 H 1.48492 * 109.47045 * 30.00414 * 3 2 1 6 6 H 1.48500 * 109.46729 * 150.00059 * 3 2 1 7 7 C 1.37876 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00209 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99925 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.47266 * 179.97438 * 9 7 2 11 11 O 1.20813 * 119.99727 * 0.02562 * 10 9 7 12 12 C 1.47906 * 119.99887 * 180.02562 * 10 9 7 13 13 C 1.39742 * 120.56744 * 180.02562 * 12 10 9 14 14 C 1.38797 * 118.23194 * 179.97438 * 13 12 10 15 15 N 1.32174 * 119.15553 * 0.02562 * 14 13 12 16 16 C 1.31906 * 121.08592 * 359.97438 * 15 14 13 17 17 N 1.31533 * 121.94654 * 359.71477 * 16 15 14 18 18 H 0.96998 * 120.00171 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47205 * 60.00066 * 9 7 2 20 20 H 1.08997 * 109.47395 * 300.00558 * 9 7 2 21 21 H 1.07993 * 120.88409 * 0.02593 * 13 12 10 22 22 H 1.07997 * 120.41680 * 180.02562 * 14 13 12 23 23 H 1.08002 * 119.03011 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 8 3.2288 -3.5331 -0.0010 12 6 5.4680 -2.8851 -0.0009 13 6 5.9469 -4.1979 -0.0013 14 6 7.3207 -4.3956 -0.0018 15 7 8.1225 -3.3449 -0.0013 16 6 7.6376 -2.1181 -0.0009 17 7 6.3438 -1.8812 -0.0065 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6804 0.8889 20 1 3.8745 -0.6800 -0.8910 21 1 5.2662 -5.0362 -0.0022 22 1 7.7292 -5.3953 -0.0026 23 1 8.3232 -1.2836 -0.0001 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069638279.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = 13.682014 kcal Electronic energy + Delta-G solvation = -11048.685039 eV Core-core repulsion = 8862.604370 eV Total energy + Delta-G solvation = -2186.080669 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.98117 -38.50866 -33.81875 -32.87495 -32.00473 -29.85426 -25.81180 -24.35517 -22.89609 -19.87268 -17.54294 -17.17364 -16.38826 -15.42950 -15.08846 -14.56194 -14.48417 -13.81729 -13.68408 -13.44464 -12.26750 -11.63290 -10.94277 -10.93540 -10.72729 -10.56909 -9.94871 -9.71316 -9.69860 -9.28357 -8.79662 -8.59284 -6.06381 -4.07379 0.54766 0.94480 2.82523 3.29903 3.37465 3.40906 3.92717 3.93233 4.08929 4.33773 4.41726 4.95546 4.99594 5.25856 5.47523 5.49912 6.22699 6.31203 6.72457 6.88748 6.95770 7.56103 7.94000 8.19778 8.49699 9.06387 9.52071 11.06252 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.059597 B = 0.010073 C = 0.008657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.711891 B = 2779.045024 C = 3233.611804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.089 0.911 9 C -0.043 4.043 10 C 0.412 3.588 11 O -0.426 6.426 12 C 0.111 3.889 13 C -0.184 4.184 14 C 0.142 3.858 15 N -0.516 5.516 16 C 0.284 3.716 17 N -0.477 5.477 18 H 0.265 0.735 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.156 0.844 22 H 0.171 0.829 23 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.613 -4.724 0.035 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.565 4.565 8 H 0.107 0.893 9 C -0.080 4.080 10 C 0.286 3.714 11 O -0.295 6.295 12 C -0.035 4.035 13 C -0.206 4.206 14 C -0.026 4.026 15 N -0.231 5.231 16 C -0.004 4.004 17 N -0.194 5.194 18 H 0.075 0.925 19 H 0.078 0.922 20 H 0.074 0.926 21 H 0.174 0.826 22 H 0.189 0.811 23 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 14.575 -4.332 0.032 15.205 hybrid contribution -0.019 0.263 -0.021 0.265 sum 14.556 -4.069 0.011 15.114 Atomic orbital electron populations 1.69898 1.06253 1.26991 1.50353 1.24956 0.94779 0.98925 0.94391 0.86872 0.80575 0.83707 0.78798 1.20052 1.21167 1.18548 1.21050 0.88044 0.95680 1.51701 0.89304 1.19882 0.98811 0.89678 0.99625 1.22935 0.83555 0.94037 0.70903 1.90333 1.56722 1.48323 1.34098 1.23118 0.98154 0.89476 0.92737 1.23229 0.98083 0.99480 0.99834 1.23267 0.89700 0.98600 0.90993 1.68311 1.41426 1.00438 1.12913 1.25037 0.90072 0.93751 0.91542 1.68530 1.03792 1.36281 1.10791 0.92542 0.92197 0.92626 0.82582 0.81149 0.78405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.95 14 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 14 3 Si 0.87 21.18 27.47 -169.99 -4.67 16.52 14 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 14 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 14 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 14 7 C -0.53 -15.28 9.48 -34.44 -0.33 -15.61 14 8 H 0.09 2.85 7.00 -52.49 -0.37 2.49 14 9 C -0.04 -1.03 4.06 -29.04 -0.12 -1.15 14 10 C 0.41 8.88 7.13 -30.35 -0.22 8.66 14 11 O -0.43 -10.05 15.51 5.95 0.09 -9.96 14 12 C 0.11 1.94 6.77 -82.74 -0.56 1.38 14 13 C -0.18 -2.57 9.72 -38.81 -0.38 -2.95 14 14 C 0.14 1.64 11.31 -17.20 -0.19 1.45 14 15 N -0.52 -6.67 10.42 -14.60 -0.15 -6.82 14 16 C 0.28 3.78 12.27 -92.28 -1.13 2.65 14 17 N -0.48 -7.92 9.94 -11.22 -0.11 -8.03 14 18 H 0.26 7.60 8.31 -40.82 -0.34 7.27 14 19 H 0.06 1.41 7.20 -51.93 -0.37 1.03 14 20 H 0.06 1.29 7.57 -51.93 -0.39 0.90 14 21 H 0.16 1.97 7.74 -52.49 -0.41 1.56 14 22 H 0.17 1.28 8.06 -52.49 -0.42 0.86 14 23 H 0.20 1.89 8.06 -52.49 -0.42 1.47 14 LS Contribution 218.19 15.07 3.29 3.29 Total: -1.00 -32.84 218.19 -5.35 -38.20 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -1.55 Total: -2.66 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -3.02 Total: -3.58 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.51 Total: -41.80 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -32.84 -5.35 -38.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069638279.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.878 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds