Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48503 * 109.47049 * 269.99801 * 3 2 1 5 5 H 1.48492 * 109.47045 * 30.00414 * 3 2 1 6 6 H 1.48500 * 109.46729 * 150.00059 * 3 2 1 7 7 C 1.37876 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00209 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99925 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.47266 * 179.97438 * 9 7 2 11 11 O 1.20813 * 119.99727 * 0.02562 * 10 9 7 12 12 C 1.47906 * 119.99887 * 180.02562 * 10 9 7 13 13 C 1.39742 * 120.56744 * 180.02562 * 12 10 9 14 14 C 1.38797 * 118.23194 * 179.97438 * 13 12 10 15 15 N 1.32174 * 119.15553 * 0.02562 * 14 13 12 16 16 C 1.31906 * 121.08592 * 359.97438 * 15 14 13 17 17 N 1.31533 * 121.94654 * 359.71477 * 16 15 14 18 18 H 0.96998 * 120.00171 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47205 * 60.00066 * 9 7 2 20 20 H 1.08997 * 109.47395 * 300.00558 * 9 7 2 21 21 H 1.07993 * 120.88409 * 0.02593 * 13 12 10 22 22 H 1.07997 * 120.41680 * 180.02562 * 14 13 12 23 23 H 1.08002 * 119.03011 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 8 3.2288 -3.5331 -0.0010 12 6 5.4680 -2.8851 -0.0009 13 6 5.9469 -4.1979 -0.0013 14 6 7.3207 -4.3956 -0.0018 15 7 8.1225 -3.3449 -0.0013 16 6 7.6376 -2.1181 -0.0009 17 7 6.3438 -1.8812 -0.0065 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6804 0.8889 20 1 3.8745 -0.6800 -0.8910 21 1 5.2662 -5.0362 -0.0022 22 1 7.7292 -5.3953 -0.0026 23 1 8.3232 -1.2836 -0.0001 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069638279.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = -9.433144 kcal Electronic energy + Delta-G solvation = -11049.687388 eV Core-core repulsion = 8862.604370 eV Total energy + Delta-G solvation = -2187.083017 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.12865 -40.16214 -35.17515 -34.85004 -33.11426 -31.85910 -27.35519 -25.45954 -24.60932 -21.42409 -19.23567 -18.52073 -18.05214 -16.54852 -16.48691 -16.46128 -15.90470 -15.33098 -15.28662 -14.57325 -14.32133 -13.52600 -12.95023 -12.44921 -12.01508 -11.87135 -11.85698 -11.56823 -11.10079 -10.81941 -10.79887 -10.18625 -8.30667 -6.39445 -0.70876 -0.05035 1.30449 1.39702 1.41735 1.54226 2.36119 2.58401 2.78467 3.03423 3.18738 3.25634 3.77864 3.97894 4.32049 4.55431 4.70734 4.83632 5.03635 5.27402 5.47982 5.77343 6.18551 6.49501 6.72009 6.97226 7.25034 8.86021 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.059597 B = 0.010073 C = 0.008657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.711891 B = 2779.045024 C = 3233.611804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.237 1.237 7 C -0.545 4.545 8 H 0.037 0.963 9 C -0.042 4.042 10 C 0.414 3.586 11 O -0.462 6.462 12 C 0.086 3.914 13 C -0.179 4.179 14 C 0.161 3.839 15 N -0.515 5.515 16 C 0.287 3.713 17 N -0.503 5.503 18 H 0.269 0.731 19 H 0.070 0.930 20 H 0.068 0.932 21 H 0.165 0.835 22 H 0.219 0.781 23 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.981 -4.272 0.036 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.160 1.160 7 C -0.583 4.583 8 H 0.055 0.945 9 C -0.079 4.079 10 C 0.290 3.710 11 O -0.333 6.333 12 C -0.058 4.058 13 C -0.201 4.201 14 C -0.007 4.007 15 N -0.229 5.229 16 C -0.001 4.001 17 N -0.220 5.220 18 H 0.078 0.922 19 H 0.088 0.912 20 H 0.086 0.914 21 H 0.183 0.817 22 H 0.236 0.764 23 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 17.964 -3.882 0.032 18.379 hybrid contribution -1.039 0.001 -0.023 1.040 sum 16.925 -3.880 0.009 17.364 Atomic orbital electron populations 1.70068 1.08519 1.28480 1.51717 1.26034 0.95717 1.03640 0.93508 0.85623 0.79765 0.77431 0.79666 1.18713 1.20745 1.15953 1.21264 0.90977 0.94047 1.51975 0.94459 1.19781 0.95359 0.92286 1.00452 1.22836 0.85969 0.92530 0.69667 1.90315 1.58435 1.48682 1.35903 1.22337 0.95634 0.91507 0.96370 1.23392 0.99629 0.98071 0.98977 1.24003 0.88271 1.00280 0.88101 1.68462 1.41376 1.00645 1.12430 1.25726 0.89218 0.95083 0.90056 1.68447 1.05030 1.36437 1.12047 0.92193 0.91242 0.91406 0.81705 0.76428 0.74981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.34 14 2 C 0.01 0.49 5.47 84.65 0.46 0.96 14 3 Si 0.95 43.58 27.47 68.60 1.88 45.47 14 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 14 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 14 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 14 7 C -0.54 -32.85 9.48 25.60 0.24 -32.60 14 8 H 0.04 2.56 7.00 -2.91 -0.02 2.54 14 9 C -0.04 -2.01 4.06 29.10 0.12 -1.89 14 10 C 0.41 18.11 7.13 28.25 0.20 18.32 14 11 O -0.46 -22.74 15.51 -1.61 -0.02 -22.76 14 12 C 0.09 2.89 6.77 41.86 0.28 3.17 14 13 C -0.18 -4.56 9.72 22.77 0.22 -4.34 14 14 C 0.16 3.06 11.31 84.78 0.96 4.01 14 15 N -0.51 -11.13 10.42 -200.10 -2.08 -13.22 14 16 C 0.29 6.61 12.27 180.93 2.22 8.83 14 17 N -0.50 -15.51 9.94 -189.42 -1.88 -17.39 14 18 H 0.27 15.88 8.31 -92.71 -0.77 15.11 14 19 H 0.07 3.20 7.20 -2.38 -0.02 3.18 14 20 H 0.07 3.09 7.57 -2.39 -0.02 3.07 14 21 H 0.17 3.87 7.74 -2.91 -0.02 3.85 14 22 H 0.22 2.00 8.06 -2.91 -0.02 1.97 14 23 H 0.23 3.44 8.06 -2.91 -0.02 3.42 14 Total: -1.00 -74.51 218.19 4.07 -70.44 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.17 Total: 1.36 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 4.71 Total: -3.55 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -3.67 Total: -90.95 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.02 Total: -22.76 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.47 kcal Total: -74.51 4.07 -70.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069638279.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.004 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds